miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 29458 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 48990 0.7 0.885468
Target:  5'- uCUGGCAGCCCaccgccGCAGAgCCgcaguuggAGCAg -3'
miRNA:   3'- -GACCGUCGGGauuu--CGUCU-GGa-------UUGU- -5'
33275 3' -52.4 NC_007605.1 + 21524 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 133864 0.74 0.68342
Target:  5'- -gGGCAGCCUggaggucuGGCAGguGCCUGACGu -3'
miRNA:   3'- gaCCGUCGGGauu-----UCGUC--UGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 154142 0.67 0.964465
Target:  5'- gUGGaGGCCCUGAGccccgccaaccuGCAGGCCcUGGCc -3'
miRNA:   3'- gACCgUCGGGAUUU------------CGUCUGG-AUUGu -5'
33275 3' -52.4 NC_007605.1 + 14114 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 52983 0.7 0.870704
Target:  5'- uCUGcGCccaaAGCCCUGAuggaAGACCUGGCAg -3'
miRNA:   3'- -GAC-CG----UCGGGAUUucg-UCUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 135020 0.76 0.587322
Target:  5'- uCUGGCAcgccgugGCCCUGAgcauGGCGG-CCUGGCAc -3'
miRNA:   3'- -GACCGU-------CGGGAUU----UCGUCuGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 17182 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 123167 0.76 0.567413
Target:  5'- aUGGggaacuuaUAGCCCUAGAGCAGGcCCUGAUg -3'
miRNA:   3'- gACC--------GUCGGGAUUUCGUCU-GGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 51447 0.7 0.885468
Target:  5'- -aGGUGGCCCcu-GGCAGGCCcaggGACu -3'
miRNA:   3'- gaCCGUCGGGauuUCGUCUGGa---UUGu -5'
33275 3' -52.4 NC_007605.1 + 26389 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 65612 0.71 0.846857
Target:  5'- gUGGCAuCUCUGAGGCGGG-CUAGCGa -3'
miRNA:   3'- gACCGUcGGGAUUUCGUCUgGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 18455 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 30731 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 12317 0.73 0.714621
Target:  5'- -aGGCGGCCCUAcuGgGGACCgggggaggAACAg -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGa-------UUGU- -5'
33275 3' -52.4 NC_007605.1 + 50743 0.66 0.98106
Target:  5'- -aGGCAcccGCCCUGGGGUccGGCUUGGCc -3'
miRNA:   3'- gaCCGU---CGGGAUUUCGu-CUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 54028 0.67 0.964465
Target:  5'- -aGGCcGCCCUGgcccGGGCAGcgGCCgggAACGg -3'
miRNA:   3'- gaCCGuCGGGAU----UUCGUC--UGGa--UUGU- -5'
33275 3' -52.4 NC_007605.1 + 60327 0.68 0.948474
Target:  5'- -gGaGCAcGCCCUGGAGCuGggauacaGCCUGACGg -3'
miRNA:   3'- gaC-CGU-CGGGAUUUCGuC-------UGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 56680 0.69 0.905803
Target:  5'- -aGGCGGCCC----GCAGacGCCUGACc -3'
miRNA:   3'- gaCCGUCGGGauuuCGUC--UGGAUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.