miRNA display CGI


Results 41 - 60 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 132230 0.72 0.324017
Target:  5'- aGG-GGGGCCAGUGGGuggGCACCUgguagagGCCg -3'
miRNA:   3'- -CCaCCCCGGUCGCCUgg-CGUGGG-------UGG- -5'
33276 3' -63.1 NC_007605.1 + 63327 0.72 0.324709
Target:  5'- aGGUgGGGGCCugacGCGGAUgGCcaACCUGCUg -3'
miRNA:   3'- -CCA-CCCCGGu---CGCCUGgCG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 170525 0.72 0.338771
Target:  5'- cGUGGGGCaUGGgGGGCCGCGCauuCCu -3'
miRNA:   3'- cCACCCCG-GUCgCCUGGCGUGgguGG- -5'
33276 3' -63.1 NC_007605.1 + 39381 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38507 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39878 0.71 0.345966
Target:  5'- -cUGGGGCUccucuGGgGGucGCUGCAUCCGCCg -3'
miRNA:   3'- ccACCCCGG-----UCgCC--UGGCGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38882 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39881 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39756 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39506 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39256 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39131 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39007 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38632 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38757 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39631 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 125499 0.71 0.35327
Target:  5'- --gGGGGCCAG-GGACgGUGCCCGg- -3'
miRNA:   3'- ccaCCCCGGUCgCCUGgCGUGGGUgg -5'
33276 3' -63.1 NC_007605.1 + 155262 0.71 0.356222
Target:  5'- uGGUagGaGGGCCAGgagcugucuucacgcCGGACCGagagguCGCCCACCu -3'
miRNA:   3'- -CCA--C-CCCGGUC---------------GCCUGGC------GUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 136493 0.71 0.368202
Target:  5'- -cUGGGGCCggAGCGG-UCGCcCCgGCCg -3'
miRNA:   3'- ccACCCCGG--UCGCCuGGCGuGGgUGG- -5'
33276 3' -63.1 NC_007605.1 + 151564 0.71 0.368202
Target:  5'- aGGUacGGGCUGGUGGGCUcccucugggagGUGCCCGCCg -3'
miRNA:   3'- -CCAc-CCCGGUCGCCUGG-----------CGUGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.