miRNA display CGI


Results 21 - 40 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 146215 0.74 0.227837
Target:  5'- uGGUGGGGCCuuGGUGGGCUGCAUaaGgCa -3'
miRNA:   3'- -CCACCCCGG--UCGCCUGGCGUGggUgG- -5'
33276 3' -63.1 NC_007605.1 + 50905 0.74 0.2331
Target:  5'- aGG-GGGGCCGggaagaagccGCGGAgauucggcccuCCGcCACCCGCCu -3'
miRNA:   3'- -CCaCCCCGGU----------CGCCU-----------GGC-GUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39059 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 38810 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 38685 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 39184 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 38560 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 38435 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 38310 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 38934 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 39309 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 39434 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 39559 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 39684 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 50355 0.73 0.289567
Target:  5'- cGGcGGGGCCgcGGUGGGCUgcccccgaggacggGCGCCgGCCg -3'
miRNA:   3'- -CCaCCCCGG--UCGCCUGG--------------CGUGGgUGG- -5'
33276 3' -63.1 NC_007605.1 + 73494 0.73 0.300503
Target:  5'- --cGGGGCCAGUGGAaucccaaggaacaauUCcuccCACCCACCg -3'
miRNA:   3'- ccaCCCCGGUCGCCU---------------GGc---GUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 162795 0.72 0.304439
Target:  5'- -aUGGGaCUGGCGG-CCGCcCCCGCCa -3'
miRNA:   3'- ccACCCcGGUCGCCuGGCGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 50581 0.72 0.317842
Target:  5'- cGG-GGGcGCUGGCGGcCgGCGCCCGuCCu -3'
miRNA:   3'- -CCaCCC-CGGUCGCCuGgCGUGGGU-GG- -5'
33276 3' -63.1 NC_007605.1 + 48464 0.72 0.317842
Target:  5'- --gGGGGCCGGgGGGCC-CugCCugaGCCg -3'
miRNA:   3'- ccaCCCCGGUCgCCUGGcGugGG---UGG- -5'
33276 3' -63.1 NC_007605.1 + 69520 0.72 0.317842
Target:  5'- uGUGGGGCgauggccucCGGgGGGCUGUACCUggGCCa -3'
miRNA:   3'- cCACCCCG---------GUCgCCUGGCGUGGG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.