Results 21 - 40 of 293 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 16280 | 0.66 | 0.62431 |
Target: 5'- -cUGGGGCCGccCGGGCUGCcgggguCCCuCCg -3' miRNA: 3'- ccACCCCGGUc-GCCUGGCGu-----GGGuGG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 16426 | 0.68 | 0.528619 |
Target: 5'- cGGUGGGGCUGGacuugaGGGCCcaaagagGC-CCCucuCCg -3' miRNA: 3'- -CCACCCCGGUCg-----CCUGG-------CGuGGGu--GG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 17086 | 0.67 | 0.586013 |
Target: 5'- --aGGGGCgGGaggGGGCUGgGCCuCACCc -3' miRNA: 3'- ccaCCCCGgUCg--CCUGGCgUGG-GUGG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 18461 | 0.7 | 0.396153 |
Target: 5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3' miRNA: 3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 18561 | 0.75 | 0.203016 |
Target: 5'- aGUGGGGCCGGUcGGCUGgGCUgGCCg -3' miRNA: 3'- cCACCCCGGUCGcCUGGCgUGGgUGG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 18718 | 0.67 | 0.56607 |
Target: 5'- --cGGGGCCAGCugccgggGGGCC-CugCCugUc -3' miRNA: 3'- ccaCCCCGGUCG-------CCUGGcGugGGugG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 18915 | 0.66 | 0.62431 |
Target: 5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3' miRNA: 3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 19034 | 0.66 | 0.662689 |
Target: 5'- uGG-GGGGCCuGUGGuggugaGCCuGCugCC-CCu -3' miRNA: 3'- -CCaCCCCGGuCGCC------UGG-CGugGGuGG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 19289 | 0.66 | 0.662689 |
Target: 5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3' miRNA: 3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 19349 | 0.66 | 0.62431 |
Target: 5'- -cUGGGGCCGccCGGGCUGCcgggguCCCuCCg -3' miRNA: 3'- ccACCCCGGUc-GCCUGGCGu-----GGGuGG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 19495 | 0.68 | 0.528619 |
Target: 5'- cGGUGGGGCUGGacuugaGGGCCcaaagagGC-CCCucuCCg -3' miRNA: 3'- -CCACCCCGGUCg-----CCUGG-------CGuGGGu--GG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 20154 | 0.68 | 0.54818 |
Target: 5'- --aGGGGCgGGaggGGGCUGgGCCuCACCu -3' miRNA: 3'- ccaCCCCGgUCg--CCUGGCgUGG-GUGG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 21530 | 0.7 | 0.396153 |
Target: 5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3' miRNA: 3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 21630 | 0.75 | 0.203016 |
Target: 5'- aGUGGGGCCGGUcGGCUGgGCUgGCCg -3' miRNA: 3'- cCACCCCGGUCGcCUGGCgUGGgUGG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 21787 | 0.67 | 0.56607 |
Target: 5'- --cGGGGCCAGCugccgggGGGCC-CugCCugUc -3' miRNA: 3'- ccaCCCCGGUCG-------CCUGGcGugGGugG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 21983 | 0.66 | 0.62431 |
Target: 5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3' miRNA: 3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 22103 | 0.66 | 0.662689 |
Target: 5'- uGG-GGGGCCuGUGGuggugaGCCuGCugCC-CCu -3' miRNA: 3'- -CCaCCCCGGuCGCC------UGG-CGugGGuGG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 22358 | 0.66 | 0.662689 |
Target: 5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3' miRNA: 3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 22418 | 0.66 | 0.62431 |
Target: 5'- -cUGGGGCCGccCGGGCUGCcgggguCCCuCCg -3' miRNA: 3'- ccACCCCGGUc-GCCUGGCGu-----GGGuGG- -5' |
|||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 22564 | 0.68 | 0.528619 |
Target: 5'- cGGUGGGGCUGGacuugaGGGCCcaaagagGC-CCCucuCCg -3' miRNA: 3'- -CCACCCCGGUCg-----CCUGG-------CGuGGGu--GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home