miRNA display CGI


Results 1 - 20 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 1833 0.67 0.605126
Target:  5'- -aUGGGGUCGGUGGG-CGCuCCuCACUu -3'
miRNA:   3'- ccACCCCGGUCGCCUgGCGuGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 2859 0.66 0.65311
Target:  5'- --cGGGGCCGGUGG-CgGUcugguaguaccaGCCCAgCg -3'
miRNA:   3'- ccaCCCCGGUCGCCuGgCG------------UGGGUgG- -5'
33276 3' -63.1 NC_007605.1 + 2922 0.69 0.456831
Target:  5'- -uUGGGGCCauuccagccauggAGCGGACUGacgGCCCcuCCg -3'
miRNA:   3'- ccACCCCGG-------------UCGCCUGGCg--UGGGu-GG- -5'
33276 3' -63.1 NC_007605.1 + 3249 0.66 0.643516
Target:  5'- -cUGGGGcCCGGgGGGCgCGCguaGCCCgagaugcacgggGCCg -3'
miRNA:   3'- ccACCCC-GGUCgCCUG-GCG---UGGG------------UGG- -5'
33276 3' -63.1 NC_007605.1 + 5002 0.69 0.481399
Target:  5'- -aUGGGGCCAGgGacucugcccuggcaGGCCGUG-CCACCg -3'
miRNA:   3'- ccACCCCGGUCgC--------------CUGGCGUgGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 12323 0.7 0.396153
Target:  5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3'
miRNA:   3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5'
33276 3' -63.1 NC_007605.1 + 12423 0.75 0.203016
Target:  5'- aGUGGGGCCGGUcGGCUGgGCUgGCCg -3'
miRNA:   3'- cCACCCCGGUCGcCUGGCgUGGgUGG- -5'
33276 3' -63.1 NC_007605.1 + 12580 0.67 0.56607
Target:  5'- --cGGGGCCAGCugccgggGGGCC-CugCCugUc -3'
miRNA:   3'- ccaCCCCGGUCG-------CCUGGcGugGGugG- -5'
33276 3' -63.1 NC_007605.1 + 12777 0.66 0.62431
Target:  5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3'
miRNA:   3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 12896 0.66 0.662689
Target:  5'- uGG-GGGGCCuGUGGuggugaGCCuGCugCC-CCu -3'
miRNA:   3'- -CCaCCCCGGuCGCC------UGG-CGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 13151 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 13211 0.66 0.62431
Target:  5'- -cUGGGGCCGccCGGGCUGCcgggguCCCuCCg -3'
miRNA:   3'- ccACCCCGGUc-GCCUGGCGu-----GGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 13357 0.68 0.528619
Target:  5'- cGGUGGGGCUGGacuugaGGGCCcaaagagGC-CCCucuCCg -3'
miRNA:   3'- -CCACCCCGGUCg-----CCUGG-------CGuGGGu--GG- -5'
33276 3' -63.1 NC_007605.1 + 14017 0.67 0.586013
Target:  5'- --aGGGGCgGGaggGGGCUGgGCCuCACCc -3'
miRNA:   3'- ccaCCCCGgUCg--CCUGGCgUGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 15392 0.7 0.396153
Target:  5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3'
miRNA:   3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5'
33276 3' -63.1 NC_007605.1 + 15492 0.75 0.203016
Target:  5'- aGUGGGGCCGGUcGGCUGgGCUgGCCg -3'
miRNA:   3'- cCACCCCGGUCGcCUGGCgUGGgUGG- -5'
33276 3' -63.1 NC_007605.1 + 15649 0.67 0.56607
Target:  5'- --cGGGGCCAGCugccgggGGGCC-CugCCugUc -3'
miRNA:   3'- ccaCCCCGGUCG-------CCUGGcGugGGugG- -5'
33276 3' -63.1 NC_007605.1 + 15846 0.66 0.62431
Target:  5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3'
miRNA:   3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 15965 0.66 0.662689
Target:  5'- uGG-GGGGCCuGUGGuggugaGCCuGCugCC-CCu -3'
miRNA:   3'- -CCaCCCCGGuCGCC------UGG-CGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 16220 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.