miRNA display CGI


Results 1 - 20 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 28121 0.66 0.62431
Target:  5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3'
miRNA:   3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39090 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 161949 0.66 0.672247
Target:  5'- --cGGGGCCAGCGcGGaggaGUACUCugACCu -3'
miRNA:   3'- ccaCCCCGGUCGC-CUgg--CGUGGG--UGG- -5'
33276 3' -63.1 NC_007605.1 + 15846 0.66 0.62431
Target:  5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3'
miRNA:   3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 115450 0.66 0.62431
Target:  5'- --aGGGuGCUcGaccuGGGCCGCGgCCACCg -3'
miRNA:   3'- ccaCCC-CGGuCg---CCUGGCGUgGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38341 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 12777 0.66 0.62431
Target:  5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3'
miRNA:   3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38716 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39215 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39340 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38965 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 21983 0.66 0.62431
Target:  5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3'
miRNA:   3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38591 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39465 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 31190 0.66 0.62431
Target:  5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3'
miRNA:   3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 80087 0.66 0.62431
Target:  5'- cGGUGGGucagcuCCAGCacGACCcauGCuCCCACCc -3'
miRNA:   3'- -CCACCCc-----GGUCGc-CUGG---CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 18915 0.66 0.62431
Target:  5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3'
miRNA:   3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 25052 0.66 0.62431
Target:  5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3'
miRNA:   3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38841 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38466 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.