miRNA display CGI


Results 21 - 40 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 28496 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39590 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141118 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 140812 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 19289 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39715 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 169639 0.66 0.643516
Target:  5'- cGGgGGGGUCGGgGGGCgccgccgggCGCAgCCAUg -3'
miRNA:   3'- -CCaCCCCGGUCgCCUG---------GCGUgGGUGg -5'
33276 3' -63.1 NC_007605.1 + 16220 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141220 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 13151 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 61181 0.66 0.65311
Target:  5'- --cGGGGCCGcCGccACCGCugCCGuCCa -3'
miRNA:   3'- ccaCCCCGGUcGCc-UGGCGugGGU-GG- -5'
33276 3' -63.1 NC_007605.1 + 141322 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 80087 0.66 0.62431
Target:  5'- cGGUGGGucagcuCCAGCacGACCcauGCuCCCACCc -3'
miRNA:   3'- -CCACCCc-----GGUCGc-CUGG---CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 140914 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 25427 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141016 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 21983 0.66 0.62431
Target:  5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3'
miRNA:   3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 31190 0.66 0.62431
Target:  5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3'
miRNA:   3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38591 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 161949 0.66 0.672247
Target:  5'- --cGGGGCCAGCGcGGaggaGUACUCugACCu -3'
miRNA:   3'- ccaCCCCGGUCGC-CUgg--CGUGGG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.