miRNA display CGI


Results 1 - 20 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 39184 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 146215 0.74 0.227837
Target:  5'- uGGUGGGGCCuuGGUGGGCUGCAUaaGgCa -3'
miRNA:   3'- -CCACCCCGG--UCGCCUGGCGUGggUgG- -5'
33276 3' -63.1 NC_007605.1 + 38310 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 38435 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 38560 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 38685 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 38810 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 38934 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 39059 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 171061 0.75 0.207785
Target:  5'- gGGUGGGGCaUGGgGGGCCGCGCauuCCu -3'
miRNA:   3'- -CCACCCCG-GUCgCCUGGCGUGgguGG- -5'
33276 3' -63.1 NC_007605.1 + 170001 0.75 0.207785
Target:  5'- gGGUGGGGCaUGGgGGGCCGCGCauuCCu -3'
miRNA:   3'- -CCACCCCG-GUCgCCUGGCGUGgguGG- -5'
33276 3' -63.1 NC_007605.1 + 123324 0.75 0.207785
Target:  5'- -cUGGGGCCAGgGGAguCgGCagguuACCCACCa -3'
miRNA:   3'- ccACCCCGGUCgCCU--GgCG-----UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 12423 0.75 0.203016
Target:  5'- aGUGGGGCCGGUcGGCUGgGCUgGCCg -3'
miRNA:   3'- cCACCCCGGUCGcCUGGCgUGGgUGG- -5'
33276 3' -63.1 NC_007605.1 + 15492 0.75 0.203016
Target:  5'- aGUGGGGCCGGUcGGCUGgGCUgGCCg -3'
miRNA:   3'- cCACCCCGGUCGcCUGGCgUGGgUGG- -5'
33276 3' -63.1 NC_007605.1 + 18561 0.75 0.203016
Target:  5'- aGUGGGGCCGGUcGGCUGgGCUgGCCg -3'
miRNA:   3'- cCACCCCGGUCGcCUGGCgUGGgUGG- -5'
33276 3' -63.1 NC_007605.1 + 21630 0.75 0.203016
Target:  5'- aGUGGGGCCGGUcGGCUGgGCUgGCCg -3'
miRNA:   3'- cCACCCCGGUCGcCUGGCgUGGgUGG- -5'
33276 3' -63.1 NC_007605.1 + 24699 0.75 0.203016
Target:  5'- aGUGGGGCCGGUcGGCUGgGCUgGCCg -3'
miRNA:   3'- cCACCCCGGUCGcCUGGCgUGGgUGG- -5'
33276 3' -63.1 NC_007605.1 + 27768 0.75 0.203016
Target:  5'- aGUGGGGCCGGUcGGCUGgGCUgGCCg -3'
miRNA:   3'- cCACCCCGGUCGcCUGGCgUGGgUGG- -5'
33276 3' -63.1 NC_007605.1 + 30837 0.75 0.203016
Target:  5'- aGUGGGGCCGGUcGGCUGgGCUgGCCg -3'
miRNA:   3'- cCACCCCGGUCGcCUGGCgUGGgUGG- -5'
33276 3' -63.1 NC_007605.1 + 33906 0.75 0.203016
Target:  5'- aGUGGGGCCGGUcGGCUGgGCUgGCCg -3'
miRNA:   3'- cCACCCCGGUCGcCUGGCgUGGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.