miRNA display CGI


Results 1 - 20 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 40289 1.11 0.000605
Target:  5'- gGGUGGGGCCAGCGGACCGCACCCACCc -3'
miRNA:   3'- -CCACCCCGGUCGCCUGGCGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39131 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38882 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 161949 0.66 0.672247
Target:  5'- --cGGGGCCAGCGcGGaggaGUACUCugACCu -3'
miRNA:   3'- ccaCCCCGGUCGC-CUgg--CGUGGG--UGG- -5'
33276 3' -63.1 NC_007605.1 + 171311 0.75 0.217614
Target:  5'- cGGgGGGGCUGGgGGGCCGCgggggaagGCCaCGCCc -3'
miRNA:   3'- -CCaCCCCGGUCgCCUGGCG--------UGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 170774 0.75 0.217614
Target:  5'- cGGgGGGGCUGGgGGGCCGCgggggaagGCCaCGCCc -3'
miRNA:   3'- -CCaCCCCGGUCgCCUGGCG--------UGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 169714 0.75 0.217614
Target:  5'- cGGgGGGGCUGGgGGGCCGCgggggaagGCCaCGCCc -3'
miRNA:   3'- -CCaCCCCGGUCgCCUGGCG--------UGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 50905 0.74 0.2331
Target:  5'- aGG-GGGGCCGggaagaagccGCGGAgauucggcccuCCGcCACCCGCCu -3'
miRNA:   3'- -CCaCCCCGGU----------CGCCU-----------GGC-GUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39881 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39256 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39631 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 50581 0.72 0.317842
Target:  5'- cGG-GGGcGCUGGCGGcCgGCGCCCGuCCu -3'
miRNA:   3'- -CCaCCC-CGGUCGCCuGgCGUGGGU-GG- -5'
33276 3' -63.1 NC_007605.1 + 159856 0.78 0.135489
Target:  5'- cGGUGgaGGGCUgaaGGCGGACUGCGCCgcCGCCu -3'
miRNA:   3'- -CCAC--CCCGG---UCGCCUGGCGUGG--GUGG- -5'
33276 3' -63.1 NC_007605.1 + 39506 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 40008 0.78 0.142209
Target:  5'- gGGcUGGGGuCCAGgGGACCacGCcCCCACCc -3'
miRNA:   3'- -CC-ACCCC-GGUCgCCUGG--CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 73494 0.73 0.300503
Target:  5'- --cGGGGCCAGUGGAaucccaaggaacaauUCcuccCACCCACCg -3'
miRNA:   3'- ccaCCCCGGUCGCCU---------------GGc---GUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39381 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39007 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 166156 0.77 0.15657
Target:  5'- --cGGGGCUAGgGGGacCCGCGCCCAUUg -3'
miRNA:   3'- ccaCCCCGGUCgCCU--GGCGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 170251 0.75 0.217614
Target:  5'- cGGgGGGGCUGGgGGGCCGCgggggaagGCCaCGCCc -3'
miRNA:   3'- -CCaCCCCGGUCgCCUGGCG--------UGG-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.