miRNA display CGI


Results 1 - 20 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 171377 0.67 0.557575
Target:  5'- gGGcGGGGaCagagaGGCGG-UCGCGCCC-CCg -3'
miRNA:   3'- -CCaCCCC-Gg----UCGCCuGGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 171366 0.66 0.661732
Target:  5'- --cGGaGCCcGCGGaccccgaccccccGCCGCccGCCCGCCg -3'
miRNA:   3'- ccaCCcCGGuCGCC-------------UGGCG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 171311 0.75 0.217614
Target:  5'- cGGgGGGGCUGGgGGGCCGCgggggaagGCCaCGCCc -3'
miRNA:   3'- -CCaCCCCGGUCgCCUGGCG--------UGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 171236 0.67 0.576497
Target:  5'- cGGgGGGGUCGGgGGgcGCCGCGCgggcgcaGCCa -3'
miRNA:   3'- -CCaCCCCGGUCgCC--UGGCGUGgg-----UGG- -5'
33276 3' -63.1 NC_007605.1 + 171061 0.75 0.207785
Target:  5'- gGGUGGGGCaUGGgGGGCCGCGCauuCCu -3'
miRNA:   3'- -CCACCCCG-GUCgCCUGGCGUGgguGG- -5'
33276 3' -63.1 NC_007605.1 + 170839 0.67 0.557575
Target:  5'- gGGcGGGGaCagagaGGCGG-UCGCGCCC-CCg -3'
miRNA:   3'- -CCaCCCC-Gg----UCGCCuGGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 170828 0.7 0.406576
Target:  5'- ---cGGGCCcGCGGaccccgaccccccGCCGCccGCCCGCCg -3'
miRNA:   3'- ccacCCCGGuCGCC-------------UGGCG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 170774 0.75 0.217614
Target:  5'- cGGgGGGGCUGGgGGGCCGCgggggaagGCCaCGCCc -3'
miRNA:   3'- -CCaCCCCGGUCgCCUGGCG--------UGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 170698 0.67 0.576497
Target:  5'- cGGgGGGGUCGGgGGgcGCCGCGCgggcgcaGCCa -3'
miRNA:   3'- -CCaCCCCGGUCgCC--UGGCGUGgg-----UGG- -5'
33276 3' -63.1 NC_007605.1 + 170525 0.72 0.338771
Target:  5'- cGUGGGGCaUGGgGGGCCGCGCauuCCu -3'
miRNA:   3'- cCACCCCG-GUCgCCUGGCGUGgguGG- -5'
33276 3' -63.1 NC_007605.1 + 170317 0.67 0.557575
Target:  5'- gGGcGGGGaCagagaGGCGG-UCGCGCCC-CCg -3'
miRNA:   3'- -CCaCCCC-Gg----UCGCCuGGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 170306 0.66 0.661732
Target:  5'- --cGGaGCCcGCGGaccccgaccccccGCCGCccGCCCGCCg -3'
miRNA:   3'- ccaCCcCGGuCGCC-------------UGGCG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 170251 0.75 0.217614
Target:  5'- cGGgGGGGCUGGgGGGCCGCgggggaagGCCaCGCCc -3'
miRNA:   3'- -CCaCCCCGGUCgCCUGGCG--------UGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 170176 0.67 0.576497
Target:  5'- cGGgGGGGUCGGgGGgcGCCGCGCgggcgcaGCCa -3'
miRNA:   3'- -CCaCCCCGGUCgCC--UGGCGUGgg-----UGG- -5'
33276 3' -63.1 NC_007605.1 + 170001 0.75 0.207785
Target:  5'- gGGUGGGGCaUGGgGGGCCGCGCauuCCu -3'
miRNA:   3'- -CCACCCCG-GUCgCCUGGCGUGgguGG- -5'
33276 3' -63.1 NC_007605.1 + 169779 0.67 0.557575
Target:  5'- gGGcGGGGaCagagaGGCGG-UCGCGCCC-CCg -3'
miRNA:   3'- -CCaCCCC-Gg----UCGCCuGGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 169769 0.66 0.661732
Target:  5'- --cGGaGCCcGCGGaccccgaccccccGCCGCccGCCCGCCg -3'
miRNA:   3'- ccaCCcCGGuCGCC-------------UGGCG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 169714 0.75 0.217614
Target:  5'- cGGgGGGGCUGGgGGGCCGCgggggaagGCCaCGCCc -3'
miRNA:   3'- -CCaCCCCGGUCgCCUGGCG--------UGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 169639 0.66 0.643516
Target:  5'- cGGgGGGGUCGGgGGGCgccgccgggCGCAgCCAUg -3'
miRNA:   3'- -CCaCCCCGGUCgCCUG---------GCGUgGGUGg -5'
33276 3' -63.1 NC_007605.1 + 169466 0.67 0.567016
Target:  5'- -cUGGGGCaUGGgGGGCCGCGCauuCCu -3'
miRNA:   3'- ccACCCCG-GUCgCCUGGCGUGgguGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.