miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 5' -56.1 NC_007605.1 + 59242 0.66 0.920687
Target:  5'- gCUGGCGGcgGCAGCcgCCgaGaGAUa- -3'
miRNA:   3'- -GAUCGCCuaCGUCGuaGGggC-CUAcu -5'
33276 5' -56.1 NC_007605.1 + 60306 0.66 0.920687
Target:  5'- cCUGGCGGcgGCgucccGGCAcacaUCCUGGAUGc -3'
miRNA:   3'- -GAUCGCCuaCG-----UCGUa---GGGGCCUACu -5'
33276 5' -56.1 NC_007605.1 + 88511 0.66 0.91441
Target:  5'- cCUGGgGGGccgGCGGCuccugguAUCCCUGGuAUGGa -3'
miRNA:   3'- -GAUCgCCUa--CGUCG-------UAGGGGCC-UACU- -5'
33276 5' -56.1 NC_007605.1 + 136496 0.66 0.909061
Target:  5'- -gGGcCGGA-GCGGUcgCCCCGGccGGc -3'
miRNA:   3'- gaUC-GCCUaCGUCGuaGGGGCCuaCU- -5'
33276 5' -56.1 NC_007605.1 + 63130 0.66 0.902895
Target:  5'- -gGGcCGGAggggGCAGCAgCCCCGcGAUu- -3'
miRNA:   3'- gaUC-GCCUa---CGUCGUaGGGGC-CUAcu -5'
33276 5' -56.1 NC_007605.1 + 52417 0.66 0.900364
Target:  5'- gUGGCGGGUgagGCGGCGcgcgucuUCCCCgucguugcugccgcGGGUGGu -3'
miRNA:   3'- gAUCGCCUA---CGUCGU-------AGGGG--------------CCUACU- -5'
33276 5' -56.1 NC_007605.1 + 76293 0.66 0.896497
Target:  5'- --cGCGGcgGCGGCuUCCCUGacUGAa -3'
miRNA:   3'- gauCGCCuaCGUCGuAGGGGCcuACU- -5'
33276 5' -56.1 NC_007605.1 + 135763 0.67 0.88987
Target:  5'- -gAGgGGAUccaggugaagGCAgGCGUCCuuGGGUGGg -3'
miRNA:   3'- gaUCgCCUA----------CGU-CGUAGGggCCUACU- -5'
33276 5' -56.1 NC_007605.1 + 40062 0.67 0.88987
Target:  5'- --cGgGGAUGCuGCAUCcgcuaguccgaCCUGGGUGGg -3'
miRNA:   3'- gauCgCCUACGuCGUAG-----------GGGCCUACU- -5'
33276 5' -56.1 NC_007605.1 + 77746 0.67 0.88987
Target:  5'- aCUGGUGGAgggGCugAGUGUCUCUGGGuuUGAa -3'
miRNA:   3'- -GAUCGCCUa--CG--UCGUAGGGGCCU--ACU- -5'
33276 5' -56.1 NC_007605.1 + 159029 0.67 0.883017
Target:  5'- -gGGCGGAcGCGGUcagccccggccaGgcccugcCCCCGGAUGGg -3'
miRNA:   3'- gaUCGCCUaCGUCG------------Ua------GGGGCCUACU- -5'
33276 5' -56.1 NC_007605.1 + 85098 0.67 0.883017
Target:  5'- aCUGGCGuGggGCAGCuGUUUCCGG-UGGc -3'
miRNA:   3'- -GAUCGC-CuaCGUCG-UAGGGGCCuACU- -5'
33276 5' -56.1 NC_007605.1 + 109003 0.67 0.853444
Target:  5'- -cAGUGGggGUGGCAagCCCGGGaGAg -3'
miRNA:   3'- gaUCGCCuaCGUCGUagGGGCCUaCU- -5'
33276 5' -56.1 NC_007605.1 + 49785 0.68 0.845538
Target:  5'- -aGGCGGcgGCAGUcgCCCCcGAa-- -3'
miRNA:   3'- gaUCGCCuaCGUCGuaGGGGcCUacu -5'
33276 5' -56.1 NC_007605.1 + 105214 0.68 0.837438
Target:  5'- -cAGCGGccgcGUGUAGgAgaaCCCGGGUGAc -3'
miRNA:   3'- gaUCGCC----UACGUCgUag-GGGCCUACU- -5'
33276 5' -56.1 NC_007605.1 + 151012 0.68 0.829153
Target:  5'- gCUGGCGag-GCGGCGUCCgCGGGc-- -3'
miRNA:   3'- -GAUCGCcuaCGUCGUAGGgGCCUacu -5'
33276 5' -56.1 NC_007605.1 + 69328 0.69 0.775053
Target:  5'- -gAGCGGAgacGCAGCAUUuucugcgCCCGGG-GAg -3'
miRNA:   3'- gaUCGCCUa--CGUCGUAG-------GGGCCUaCU- -5'
33276 5' -56.1 NC_007605.1 + 41636 0.7 0.71822
Target:  5'- --uGCaGAUGCAG-GUCUCCGGGUGGg -3'
miRNA:   3'- gauCGcCUACGUCgUAGGGGCCUACU- -5'
33276 5' -56.1 NC_007605.1 + 38430 0.71 0.667982
Target:  5'- cCUGGCGGuaGUGCAGUGUCCCUGcugcccAUGGa -3'
miRNA:   3'- -GAUCGCC--UACGUCGUAGGGGCc-----UACU- -5'
33276 5' -56.1 NC_007605.1 + 23165 0.71 0.657813
Target:  5'- -aAGCGGGUGCAGUaacagguaAUCUCUGGuaGUGAu -3'
miRNA:   3'- gaUCGCCUACGUCG--------UAGGGGCC--UACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.