miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 3' -54.6 NC_007605.1 + 67957 0.72 0.703539
Target:  5'- cGGG-GCCU-CCUCUGGGCUcuggugauucugCCACUCg -3'
miRNA:   3'- aCCUaUGGAuGGAGAUCCGA------------GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 40879 0.72 0.72352
Target:  5'- aUGGAggggACCcuCCUg-AGGCUCCGCCUa -3'
miRNA:   3'- -ACCUa---UGGauGGAgaUCCGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 143695 0.72 0.72352
Target:  5'- aUGGAggggACCcuCCUg-AGGCUCCGCCUa -3'
miRNA:   3'- -ACCUa---UGGauGGAgaUCCGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 144012 0.71 0.743186
Target:  5'- aGGGUucCCUuCCUCUAGGUUCUauauACCUa -3'
miRNA:   3'- aCCUAu-GGAuGGAGAUCCGAGG----UGGG- -5'
33277 3' -54.6 NC_007605.1 + 41196 0.71 0.743186
Target:  5'- aGGGUucCCUuCCUCUAGGUUCUauauACCUa -3'
miRNA:   3'- aCCUAu-GGAuGGAGAUCCGAGG----UGGG- -5'
33277 3' -54.6 NC_007605.1 + 12531 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 30945 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 21738 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 34014 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 15600 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 27876 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 24807 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 18669 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 87775 0.71 0.76246
Target:  5'- cGGGgccuCCUGCCgcgGGGcCUCCugCCg -3'
miRNA:   3'- aCCUau--GGAUGGagaUCC-GAGGugGG- -5'
33277 3' -54.6 NC_007605.1 + 161935 0.71 0.771927
Target:  5'- aGGAguacucugACCUGgcCCUCUuuguggacggGGGCUCCcggGCCCa -3'
miRNA:   3'- aCCUa-------UGGAU--GGAGA----------UCCGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 55394 0.71 0.780341
Target:  5'- aGGAUGCCcugagacUACuCUCUGGGCUgCAgaaucagcucuCCCa -3'
miRNA:   3'- aCCUAUGG-------AUG-GAGAUCCGAgGU-----------GGG- -5'
33277 3' -54.6 NC_007605.1 + 76152 0.71 0.781269
Target:  5'- gUGGA--CCUagGCCUCUAuGC-CCGCCCa -3'
miRNA:   3'- -ACCUauGGA--UGGAGAUcCGaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 165750 0.7 0.789562
Target:  5'- gGGAcACCUgcacgagACCcCUGGGCucucaggaacUCCGCCCa -3'
miRNA:   3'- aCCUaUGGA-------UGGaGAUCCG----------AGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 67480 0.7 0.790477
Target:  5'- cUGGGcauaaauucuccUGCCUGCCUCUGcucugguacguuGGCUUCugCUg -3'
miRNA:   3'- -ACCU------------AUGGAUGGAGAU------------CCGAGGugGG- -5'
33277 3' -54.6 NC_007605.1 + 124903 0.7 0.799541
Target:  5'- -uGAUGCCcGCCUCUcuGGCaUCCuuGCCCa -3'
miRNA:   3'- acCUAUGGaUGGAGAu-CCG-AGG--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.