miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 3' -54.6 NC_007605.1 + 40956 1.13 0.002344
Target:  5'- aUGGAUACCUACCUCUAGGCUCCACCCa -3'
miRNA:   3'- -ACCUAUGGAUGGAGAUCCGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 143772 1.13 0.002344
Target:  5'- aUGGAUACCUACCUCUAGGCUCCACCCa -3'
miRNA:   3'- -ACCUAUGGAUGGAGAUCCGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 91605 0.81 0.253976
Target:  5'- gUGGGccaaccggccccUGCCUGCCUCUuuGGCUCcCACCCc -3'
miRNA:   3'- -ACCU------------AUGGAUGGAGAu-CCGAG-GUGGG- -5'
33277 3' -54.6 NC_007605.1 + 87805 0.78 0.392168
Target:  5'- cGGGgccuCCUGCCgcgGGGCUCCugCCg -3'
miRNA:   3'- aCCUau--GGAUGGagaUCCGAGGugGG- -5'
33277 3' -54.6 NC_007605.1 + 114900 0.78 0.40067
Target:  5'- cGGAUGCCUGCCUau-GGauagauagCCACCCg -3'
miRNA:   3'- aCCUAUGGAUGGAgauCCga------GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 16292 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 34706 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 31637 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 28568 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 25499 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 22430 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 19361 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 13223 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 60397 0.74 0.57085
Target:  5'- cGGAUcACCc-CCUCUGGGC-CCACaCCa -3'
miRNA:   3'- aCCUA-UGGauGGAGAUCCGaGGUG-GG- -5'
33277 3' -54.6 NC_007605.1 + 40873 0.74 0.57085
Target:  5'- gGGGUACCccccuacccUACCUUaAGGUgcgCCACCCu -3'
miRNA:   3'- aCCUAUGG---------AUGGAGaUCCGa--GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 87739 0.74 0.591188
Target:  5'- cGGAUACUggGCCUCcugccgugGGGcCUCCugCCg -3'
miRNA:   3'- aCCUAUGGa-UGGAGa-------UCC-GAGGugGG- -5'
33277 3' -54.6 NC_007605.1 + 136640 0.73 0.652683
Target:  5'- uUGGcuUGCCggGCCUCUuuGGCcccccUCCACCCg -3'
miRNA:   3'- -ACCu-AUGGa-UGGAGAu-CCG-----AGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 65828 0.73 0.652683
Target:  5'- -uGAUGCCcACCUC-AGGCUgUGCCCa -3'
miRNA:   3'- acCUAUGGaUGGAGaUCCGAgGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 143689 0.72 0.683315
Target:  5'- gGGGUACCccccuacccUACCUU-AGGUgcgCCACCCu -3'
miRNA:   3'- aCCUAUGG---------AUGGAGaUCCGa--GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 58868 0.72 0.693453
Target:  5'- aGGAUGCCg--CUCUGGGCaugagggcaUCCAgCCg -3'
miRNA:   3'- aCCUAUGGaugGAGAUCCG---------AGGUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.