miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 3' -54.6 NC_007605.1 + 12470 0.66 0.951987
Target:  5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3'
miRNA:   3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5'
33277 3' -54.6 NC_007605.1 + 12531 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 13153 0.66 0.948659
Target:  5'- cUGaGGUGCCccgACCUCUGGaCUCUgggGCCUg -3'
miRNA:   3'- -AC-CUAUGGa--UGGAGAUCcGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 13223 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 13282 0.68 0.906389
Target:  5'- gGGAcGCCUAgggucCCUucugggggacaucCUGGGCUCUgaaGCCCg -3'
miRNA:   3'- aCCUaUGGAU-----GGA-------------GAUCCGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 14404 0.67 0.929749
Target:  5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3'
miRNA:   3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 15539 0.66 0.951987
Target:  5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3'
miRNA:   3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5'
33277 3' -54.6 NC_007605.1 + 15600 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 16292 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 16351 0.68 0.906389
Target:  5'- gGGAcGCCUAgggucCCUucugggggacaucCUGGGCUCUgaaGCCCg -3'
miRNA:   3'- aCCUaUGGAU-----GGA-------------GAUCCGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 17473 0.67 0.929749
Target:  5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3'
miRNA:   3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 18608 0.66 0.951987
Target:  5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3'
miRNA:   3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5'
33277 3' -54.6 NC_007605.1 + 18669 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 19361 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 19420 0.68 0.906389
Target:  5'- gGGAcGCCUAgggucCCUucugggggacaucCUGGGCUCUgaaGCCCg -3'
miRNA:   3'- aCCUaUGGAU-----GGA-------------GAUCCGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 20542 0.67 0.929749
Target:  5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3'
miRNA:   3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 21677 0.66 0.951987
Target:  5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3'
miRNA:   3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5'
33277 3' -54.6 NC_007605.1 + 21738 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 22430 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 22489 0.68 0.906389
Target:  5'- gGGAcGCCUAgggucCCUucugggggacaucCUGGGCUCUgaaGCCCg -3'
miRNA:   3'- aCCUaUGGAU-----GGA-------------GAUCCGAGG---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.