miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 3' -54.6 NC_007605.1 + 165750 0.7 0.789562
Target:  5'- gGGAcACCUgcacgagACCcCUGGGCucucaggaacUCCGCCCa -3'
miRNA:   3'- aCCUaUGGA-------UGGaGAUCCG----------AGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 161935 0.71 0.771927
Target:  5'- aGGAguacucugACCUGgcCCUCUuuguggacggGGGCUCCcggGCCCa -3'
miRNA:   3'- aCCUa-------UGGAU--GGAGA----------UCCGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 160818 0.69 0.850437
Target:  5'- cGGAgcCCUGCC-CUc--CUCCACCCa -3'
miRNA:   3'- aCCUauGGAUGGaGAuccGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 160014 0.67 0.929749
Target:  5'- cGGG-ACCgcgcccuCCUCUGGGC--CGCCCg -3'
miRNA:   3'- aCCUaUGGau-----GGAGAUCCGagGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 158822 0.66 0.956703
Target:  5'- gGGGgcaggGCCUgGCCg--GGGCugaccgcgUCCGCCCg -3'
miRNA:   3'- aCCUa----UGGA-UGGagaUCCG--------AGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 155869 0.69 0.8733
Target:  5'- gUGGGUGUCUGCCUCc-GGC-CUugCCg -3'
miRNA:   3'- -ACCUAUGGAUGGAGauCCGaGGugGG- -5'
33277 3' -54.6 NC_007605.1 + 154697 0.68 0.907007
Target:  5'- gUGuucuCCUGCCUCcuGGCggCCGCCCa -3'
miRNA:   3'- -ACcuauGGAUGGAGauCCGa-GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 153697 0.67 0.93968
Target:  5'- aGGG---CUACCUgUGGGCUUUuuGCCCg -3'
miRNA:   3'- aCCUaugGAUGGAgAUCCGAGG--UGGG- -5'
33277 3' -54.6 NC_007605.1 + 144012 0.71 0.743186
Target:  5'- aGGGUucCCUuCCUCUAGGUUCUauauACCUa -3'
miRNA:   3'- aCCUAu-GGAuGGAGAUCCGAGG----UGGG- -5'
33277 3' -54.6 NC_007605.1 + 143856 0.68 0.884704
Target:  5'- aGGAaccuagcugaauCCUACCUa---GCUCCACCCa -3'
miRNA:   3'- aCCUau----------GGAUGGAgaucCGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 143772 1.13 0.002344
Target:  5'- aUGGAUACCUACCUCUAGGCUCCACCCa -3'
miRNA:   3'- -ACCUAUGGAUGGAGAUCCGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 143695 0.72 0.72352
Target:  5'- aUGGAggggACCcuCCUg-AGGCUCCGCCUa -3'
miRNA:   3'- -ACCUa---UGGauGGAgaUCCGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 143689 0.72 0.683315
Target:  5'- gGGGUACCccccuacccUACCUU-AGGUgcgCCACCCu -3'
miRNA:   3'- aCCUAUGG---------AUGGAGaUCCGa--GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 141711 0.67 0.934835
Target:  5'- gGGGUGCCggcugcaGCCggguccgGGGUUCCgGCCCu -3'
miRNA:   3'- aCCUAUGGa------UGGaga----UCCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 136640 0.73 0.652683
Target:  5'- uUGGcuUGCCggGCCUCUuuGGCcccccUCCACCCg -3'
miRNA:   3'- -ACCu-AUGGa-UGGAGAu-CCG-----AGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 135696 0.66 0.956703
Target:  5'- cGGGUcucuuuagcgcaGCCUcgauuACCUCUGGGacuUCCuguCCCu -3'
miRNA:   3'- aCCUA------------UGGA-----UGGAGAUCCg--AGGu--GGG- -5'
33277 3' -54.6 NC_007605.1 + 135418 0.66 0.956703
Target:  5'- cUGG-UACCUGCUUUaccGGGC-CCugGCCCg -3'
miRNA:   3'- -ACCuAUGGAUGGAGa--UCCGaGG--UGGG- -5'
33277 3' -54.6 NC_007605.1 + 135179 0.66 0.956703
Target:  5'- cGGuUACCggggcgcaggGCCUCUgccGGGaagcCCACCCg -3'
miRNA:   3'- aCCuAUGGa---------UGGAGA---UCCga--GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 133703 0.68 0.880494
Target:  5'- cGGugGCCUACCUgCUacuccagggGGGCUCuCACaCCa -3'
miRNA:   3'- aCCuaUGGAUGGA-GA---------UCCGAG-GUG-GG- -5'
33277 3' -54.6 NC_007605.1 + 132086 0.69 0.842409
Target:  5'- cGGGUGCUgguggCUGGGCUCC-CCUg -3'
miRNA:   3'- aCCUAUGGauggaGAUCCGAGGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.