miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 3' -54.6 NC_007605.1 + 20542 0.67 0.929749
Target:  5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3'
miRNA:   3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 132086 0.69 0.842409
Target:  5'- cGGGUGCUgguggCUGGGCUCC-CCUg -3'
miRNA:   3'- aCCUAUGGauggaGAUCCGAGGuGGG- -5'
33277 3' -54.6 NC_007605.1 + 160818 0.69 0.850437
Target:  5'- cGGAgcCCUGCC-CUc--CUCCACCCa -3'
miRNA:   3'- aCCUauGGAUGGaGAuccGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 155869 0.69 0.8733
Target:  5'- gUGGGUGUCUGCCUCc-GGC-CUugCCg -3'
miRNA:   3'- -ACCUAUGGAUGGAGauCCGaGGugGG- -5'
33277 3' -54.6 NC_007605.1 + 76688 0.68 0.878359
Target:  5'- gGGGUGCCUgugccucgucuACCUCUguuccuucugcuccAGuGcCUCCGCCUg -3'
miRNA:   3'- aCCUAUGGA-----------UGGAGA--------------UC-C-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 133703 0.68 0.880494
Target:  5'- cGGugGCCUACCUgCUacuccagggGGGCUCuCACaCCa -3'
miRNA:   3'- aCCuaUGGAUGGA-GA---------UCCGAG-GUG-GG- -5'
33277 3' -54.6 NC_007605.1 + 97369 0.68 0.900726
Target:  5'- aUGGAguagAUUUGCCUCccuGGuUUCCACCUa -3'
miRNA:   3'- -ACCUa---UGGAUGGAGau-CC-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 14404 0.67 0.929749
Target:  5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3'
miRNA:   3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 17473 0.67 0.929749
Target:  5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3'
miRNA:   3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 89600 0.7 0.817203
Target:  5'- uUGGGUACCcaggugaugGCCgc--GGCUgCCACCCg -3'
miRNA:   3'- -ACCUAUGGa--------UGGagauCCGA-GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 124903 0.7 0.799541
Target:  5'- -uGAUGCCcGCCUCUcuGGCaUCCuuGCCCa -3'
miRNA:   3'- acCUAUGGaUGGAGAu-CCG-AGG--UGGG- -5'
33277 3' -54.6 NC_007605.1 + 67480 0.7 0.790477
Target:  5'- cUGGGcauaaauucuccUGCCUGCCUCUGcucugguacguuGGCUUCugCUg -3'
miRNA:   3'- -ACCU------------AUGGAUGGAGAU------------CCGAGGugGG- -5'
33277 3' -54.6 NC_007605.1 + 40873 0.74 0.57085
Target:  5'- gGGGUACCccccuacccUACCUUaAGGUgcgCCACCCu -3'
miRNA:   3'- aCCUAUGG---------AUGGAGaUCCGa--GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 87739 0.74 0.591188
Target:  5'- cGGAUACUggGCCUCcugccgugGGGcCUCCugCCg -3'
miRNA:   3'- aCCUAUGGa-UGGAGa-------UCC-GAGGugGG- -5'
33277 3' -54.6 NC_007605.1 + 136640 0.73 0.652683
Target:  5'- uUGGcuUGCCggGCCUCUuuGGCcccccUCCACCCg -3'
miRNA:   3'- -ACCu-AUGGa-UGGAGAu-CCG-----AGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 65828 0.73 0.652683
Target:  5'- -uGAUGCCcACCUC-AGGCUgUGCCCa -3'
miRNA:   3'- acCUAUGGaUGGAGaUCCGAgGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 143689 0.72 0.683315
Target:  5'- gGGGUACCccccuacccUACCUU-AGGUgcgCCACCCu -3'
miRNA:   3'- aCCUAUGG---------AUGGAGaUCCGa--GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 58868 0.72 0.693453
Target:  5'- aGGAUGCCg--CUCUGGGCaugagggcaUCCAgCCg -3'
miRNA:   3'- aCCUAUGGaugGAGAUCCG---------AGGUgGG- -5'
33277 3' -54.6 NC_007605.1 + 87775 0.71 0.76246
Target:  5'- cGGGgccuCCUGCCgcgGGGcCUCCugCCg -3'
miRNA:   3'- aCCUau--GGAUGGagaUCC-GAGGugGG- -5'
33277 3' -54.6 NC_007605.1 + 165750 0.7 0.789562
Target:  5'- gGGAcACCUgcacgagACCcCUGGGCucucaggaacUCCGCCCa -3'
miRNA:   3'- aCCUaUGGA-------UGGaGAUCCG----------AGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.