miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 3' -54.6 NC_007605.1 + 143772 1.13 0.002344
Target:  5'- aUGGAUACCUACCUCUAGGCUCCACCCa -3'
miRNA:   3'- -ACCUAUGGAUGGAGAUCCGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 41196 0.71 0.743186
Target:  5'- aGGGUucCCUuCCUCUAGGUUCUauauACCUa -3'
miRNA:   3'- aCCUAu-GGAuGGAGAUCCGAGG----UGGG- -5'
33277 3' -54.6 NC_007605.1 + 30945 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 93768 0.66 0.959665
Target:  5'- aGGAgagGCCUGCUguguugaaagAGGCgcaugCCAUCCu -3'
miRNA:   3'- aCCUa--UGGAUGGaga-------UCCGa----GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 34706 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 31637 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 25499 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 22430 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 13223 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 144012 0.71 0.743186
Target:  5'- aGGGUucCCUuCCUCUAGGUUCUauauACCUa -3'
miRNA:   3'- aCCUAu-GGAuGGAGAUCCGAGG----UGGG- -5'
33277 3' -54.6 NC_007605.1 + 67957 0.72 0.703539
Target:  5'- cGGG-GCCU-CCUCUGGGCUcuggugauucugCCACUCg -3'
miRNA:   3'- aCCUaUGGAuGGAGAUCCGA------------GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 16292 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 40956 1.13 0.002344
Target:  5'- aUGGAUACCUACCUCUAGGCUCCACCCa -3'
miRNA:   3'- -ACCUAUGGAUGGAGAUCCGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 143695 0.72 0.72352
Target:  5'- aUGGAggggACCcuCCUg-AGGCUCCGCCUa -3'
miRNA:   3'- -ACCUa---UGGauGGAgaUCCGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 91605 0.81 0.253976
Target:  5'- gUGGGccaaccggccccUGCCUGCCUCUuuGGCUCcCACCCc -3'
miRNA:   3'- -ACCU------------AUGGAUGGAGAu-CCGAG-GUGGG- -5'
33277 3' -54.6 NC_007605.1 + 19361 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 40879 0.72 0.72352
Target:  5'- aUGGAggggACCcuCCUg-AGGCUCCGCCUa -3'
miRNA:   3'- -ACCUa---UGGauGGAgaUCCGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 34014 0.71 0.750946
Target:  5'- cGGGUGCUgggACCUCgggugcccgcuGGCUCCaACCUc -3'
miRNA:   3'- aCCUAUGGa--UGGAGau---------CCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 114900 0.78 0.40067
Target:  5'- cGGAUGCCUGCCUau-GGauagauagCCACCCg -3'
miRNA:   3'- aCCUAUGGAUGGAgauCCga------GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 28568 0.78 0.40929
Target:  5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3'
miRNA:   3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.