Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33277 | 3' | -54.6 | NC_007605.1 | + | 33952 | 0.66 | 0.951987 |
Target: 5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3' miRNA: 3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 15539 | 0.66 | 0.951987 |
Target: 5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3' miRNA: 3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 18608 | 0.66 | 0.951987 |
Target: 5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3' miRNA: 3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 21677 | 0.66 | 0.951987 |
Target: 5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3' miRNA: 3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 24746 | 0.66 | 0.951987 |
Target: 5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3' miRNA: 3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 27815 | 0.66 | 0.951987 |
Target: 5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3' miRNA: 3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 30884 | 0.66 | 0.951987 |
Target: 5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3' miRNA: 3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 94892 | 0.66 | 0.956703 |
Target: 5'- cGGc--CCUGCCUCc-GGCcCCAUCCc -3' miRNA: 3'- aCCuauGGAUGGAGauCCGaGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 135696 | 0.66 | 0.956703 |
Target: 5'- cGGGUcucuuuagcgcaGCCUcgauuACCUCUGGGacuUCCuguCCCu -3' miRNA: 3'- aCCUA------------UGGA-----UGGAGAUCCg--AGGu--GGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 12470 | 0.66 | 0.951987 |
Target: 5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3' miRNA: 3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 121698 | 0.66 | 0.944288 |
Target: 5'- gUGGAUACCcAUgUCaguagugauGGCcgCCACCCu -3' miRNA: 3'- -ACCUAUGGaUGgAGau-------CCGa-GGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 51683 | 0.66 | 0.952796 |
Target: 5'- gGGggGCCUgGCCUCcuUAGGUuuggCgGCCCu -3' miRNA: 3'- aCCuaUGGA-UGGAG--AUCCGa---GgUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 58760 | 0.66 | 0.948659 |
Target: 5'- aGGAUGCg-GCC-CcGGGCacccCCGCCCa -3' miRNA: 3'- aCCUAUGgaUGGaGaUCCGa---GGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 158822 | 0.66 | 0.956703 |
Target: 5'- gGGGgcaggGCCUgGCCg--GGGCugaccgcgUCCGCCCg -3' miRNA: 3'- aCCUa----UGGA-UGGagaUCCG--------AGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 87849 | 0.66 | 0.956322 |
Target: 5'- cGGG-GCCUcgcauacuggcGCCUCUuuccgcuGGGcCUCCugCCg -3' miRNA: 3'- aCCUaUGGA-----------UGGAGA-------UCC-GAGGugGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 93768 | 0.66 | 0.959665 |
Target: 5'- aGGAgagGCCUGCUguguugaaagAGGCgcaugCCAUCCu -3' miRNA: 3'- aCCUa--UGGAUGGaga-------UCCGa----GGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 13153 | 0.66 | 0.948659 |
Target: 5'- cUGaGGUGCCccgACCUCUGGaCUCUgggGCCUg -3' miRNA: 3'- -AC-CUAUGGa--UGGAGAUCcGAGG---UGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 130431 | 0.66 | 0.952796 |
Target: 5'- cGGugacauuUGCCUcucuccacagcGCCUCUGGGCUaagGCCUg -3' miRNA: 3'- aCCu------AUGGA-----------UGGAGAUCCGAgg-UGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 83471 | 0.66 | 0.944288 |
Target: 5'- cUGGA-GCCUGCg-UUGGGUUCaCAUCCa -3' miRNA: 3'- -ACCUaUGGAUGgaGAUCCGAG-GUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 91449 | 0.66 | 0.956703 |
Target: 5'- aUGGAaggGCCUGauCCUCUuuGGCUgacacaccucUCGCCCc -3' miRNA: 3'- -ACCUa--UGGAU--GGAGAu-CCGA----------GGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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