miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 3' -54.6 NC_007605.1 + 30884 0.66 0.951987
Target:  5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3'
miRNA:   3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5'
33277 3' -54.6 NC_007605.1 + 21677 0.66 0.951987
Target:  5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3'
miRNA:   3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5'
33277 3' -54.6 NC_007605.1 + 58760 0.66 0.948659
Target:  5'- aGGAUGCg-GCC-CcGGGCacccCCGCCCa -3'
miRNA:   3'- aCCUAUGgaUGGaGaUCCGa---GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 13153 0.66 0.948659
Target:  5'- cUGaGGUGCCccgACCUCUGGaCUCUgggGCCUg -3'
miRNA:   3'- -AC-CUAUGGa--UGGAGAUCcGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 121698 0.66 0.944288
Target:  5'- gUGGAUACCcAUgUCaguagugauGGCcgCCACCCu -3'
miRNA:   3'- -ACCUAUGGaUGgAGau-------CCGa-GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 83471 0.66 0.944288
Target:  5'- cUGGA-GCCUGCg-UUGGGUUCaCAUCCa -3'
miRNA:   3'- -ACCUaUGGAUGgaGAUCCGAG-GUGGG- -5'
33277 3' -54.6 NC_007605.1 + 43567 0.67 0.93968
Target:  5'- uUGGggGCCUGgaCUgUGGuaUCCACCUa -3'
miRNA:   3'- -ACCuaUGGAUg-GAgAUCcgAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 44317 0.67 0.93968
Target:  5'- aGGuucAUgUGCCUCaGGaguuuaGCUCCACCCa -3'
miRNA:   3'- aCCua-UGgAUGGAGaUC------CGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 153697 0.67 0.93968
Target:  5'- aGGG---CUACCUgUGGGCUUUuuGCCCg -3'
miRNA:   3'- aCCUaugGAUGGAgAUCCGAGG--UGGG- -5'
33277 3' -54.6 NC_007605.1 + 65994 0.67 0.93968
Target:  5'- gGGGgccgugucuCCUGCCUCccggAGGCUCUGCg- -3'
miRNA:   3'- aCCUau-------GGAUGGAGa---UCCGAGGUGgg -5'
33277 3' -54.6 NC_007605.1 + 118925 0.67 0.934835
Target:  5'- aUGG-UACCaaaCUCgGGGC-CCACCCc -3'
miRNA:   3'- -ACCuAUGGaugGAGaUCCGaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 51097 0.67 0.934835
Target:  5'- gGGAgcuucCCggagACCggUCUGGGCUCUcggaaGCCCu -3'
miRNA:   3'- aCCUau---GGa---UGG--AGAUCCGAGG-----UGGG- -5'
33277 3' -54.6 NC_007605.1 + 141711 0.67 0.934835
Target:  5'- gGGGUGCCggcugcaGCCggguccgGGGUUCCgGCCCu -3'
miRNA:   3'- aCCUAUGGa------UGGaga----UCCGAGG-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 59279 0.67 0.934835
Target:  5'- gUGuGUGCCUccGCCUCUccucugucuGGGCcgCCGCCg -3'
miRNA:   3'- -ACcUAUGGA--UGGAGA---------UCCGa-GGUGGg -5'
33277 3' -54.6 NC_007605.1 + 26680 0.67 0.929749
Target:  5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3'
miRNA:   3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 29749 0.67 0.929749
Target:  5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3'
miRNA:   3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 32818 0.67 0.929749
Target:  5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3'
miRNA:   3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 160014 0.67 0.929749
Target:  5'- cGGG-ACCgcgcccuCCUCUGGGC--CGCCCg -3'
miRNA:   3'- aCCUaUGGau-----GGAGAUCCGagGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 20542 0.67 0.929749
Target:  5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3'
miRNA:   3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 17473 0.67 0.929749
Target:  5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3'
miRNA:   3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.