miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 3' -54.6 NC_007605.1 + 32818 0.67 0.929749
Target:  5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3'
miRNA:   3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 20542 0.67 0.929749
Target:  5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3'
miRNA:   3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 74625 0.67 0.923878
Target:  5'- -cGAUGCCauCCUCUcgcggccugacgaGGGCUuCCGCCUg -3'
miRNA:   3'- acCUAUGGauGGAGA-------------UCCGA-GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 120497 0.67 0.918857
Target:  5'- cGGAggUGCCaggGCCcCUuGGCUUgGCCCu -3'
miRNA:   3'- aCCU--AUGGa--UGGaGAuCCGAGgUGGG- -5'
33277 3' -54.6 NC_007605.1 + 63509 0.67 0.913051
Target:  5'- aGGcccccACCUGCCUCgacccGGGCggcuaCACCCc -3'
miRNA:   3'- aCCua---UGGAUGGAGa----UCCGag---GUGGG- -5'
33277 3' -54.6 NC_007605.1 + 111789 0.68 0.909453
Target:  5'- cUGGAacUACCgUACUcuaccccacguaugaUCUGGGCUCCAUa- -3'
miRNA:   3'- -ACCU--AUGG-AUGG---------------AGAUCCGAGGUGgg -5'
33277 3' -54.6 NC_007605.1 + 154697 0.68 0.907007
Target:  5'- gUGuucuCCUGCCUCcuGGCggCCGCCCa -3'
miRNA:   3'- -ACcuauGGAUGGAGauCCGa-GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 22489 0.68 0.906389
Target:  5'- gGGAcGCCUAgggucCCUucugggggacaucCUGGGCUCUgaaGCCCg -3'
miRNA:   3'- aCCUaUGGAU-----GGA-------------GAUCCGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 16351 0.68 0.906389
Target:  5'- gGGAcGCCUAgggucCCUucugggggacaucCUGGGCUCUgaaGCCCg -3'
miRNA:   3'- aCCUaUGGAU-----GGA-------------GAUCCGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 25558 0.68 0.906389
Target:  5'- gGGAcGCCUAgggucCCUucugggggacaucCUGGGCUCUgaaGCCCg -3'
miRNA:   3'- aCCUaUGGAU-----GGA-------------GAUCCGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 28627 0.68 0.906389
Target:  5'- gGGAcGCCUAgggucCCUucugggggacaucCUGGGCUCUgaaGCCCg -3'
miRNA:   3'- aCCUaUGGAU-----GGA-------------GAUCCGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 31696 0.68 0.906389
Target:  5'- gGGAcGCCUAgggucCCUucugggggacaucCUGGGCUCUgaaGCCCg -3'
miRNA:   3'- aCCUaUGGAU-----GGA-------------GAUCCGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 34765 0.68 0.906389
Target:  5'- gGGAcGCCUAgggucCCUucugggggacaucCUGGGCUCUgaaGCCCg -3'
miRNA:   3'- aCCUaUGGAU-----GGA-------------GAUCCGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 19420 0.68 0.906389
Target:  5'- gGGAcGCCUAgggucCCUucugggggacaucCUGGGCUCUgaaGCCCg -3'
miRNA:   3'- aCCUaUGGAU-----GGA-------------GAUCCGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 13282 0.68 0.906389
Target:  5'- gGGAcGCCUAgggucCCUucugggggacaucCUGGGCUCUgaaGCCCg -3'
miRNA:   3'- aCCUaUGGAU-----GGA-------------GAUCCGAGG---UGGG- -5'
33277 3' -54.6 NC_007605.1 + 97369 0.68 0.900726
Target:  5'- aUGGAguagAUUUGCCUCccuGGuUUCCACCUa -3'
miRNA:   3'- -ACCUa---UGGAUGGAGau-CC-GAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 52533 0.68 0.900726
Target:  5'- aUGGAUACCcgagccgcCCUCU-GGC-CgCACCCc -3'
miRNA:   3'- -ACCUAUGGau------GGAGAuCCGaG-GUGGG- -5'
33277 3' -54.6 NC_007605.1 + 143856 0.68 0.884704
Target:  5'- aGGAaccuagcugaauCCUACCUa---GCUCCACCCa -3'
miRNA:   3'- aCCUau----------GGAUGGAgaucCGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 41040 0.68 0.884704
Target:  5'- aGGAaccuagcugaauCCUACCUa---GCUCCACCCa -3'
miRNA:   3'- aCCUau----------GGAUGGAgaucCGAGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 45304 0.68 0.883309
Target:  5'- cGGAccAUCUgcccacucugcgagaGCCUCgGGGC-CCACCCg -3'
miRNA:   3'- aCCUa-UGGA---------------UGGAGaUCCGaGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.