miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 5' -63.8 NC_007605.1 + 52414 0.65 0.618331
Target:  5'- gCGGuGGCGGgugaggcGGCgCGcGUCUUCCCCgUCg -3'
miRNA:   3'- -GCC-CCGCC-------UCGgGU-UAGGAGGGGgAG- -5'
33277 5' -63.8 NC_007605.1 + 168801 0.66 0.609651
Target:  5'- gGGGGCcgucgcGGGCCCGGUgggCCCCuCUCa -3'
miRNA:   3'- gCCCCGc-----CUCGGGUUAggaGGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 58862 0.66 0.609651
Target:  5'- aCGGGGU--GGCCCAGUUCaUCCUCUa- -3'
miRNA:   3'- -GCCCCGccUCGGGUUAGG-AGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 77531 0.66 0.609651
Target:  5'- gGGGGCGu-GCCUuuGGUgacauuaaCCUCCCCCg- -3'
miRNA:   3'- gCCCCGCcuCGGG--UUA--------GGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 153749 0.66 0.609651
Target:  5'- aGGaGGCGGccAGCC---UCCUCUCCCa- -3'
miRNA:   3'- gCC-CCGCC--UCGGguuAGGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 108999 0.66 0.608688
Target:  5'- gGGGGUGGcaAGCCCGGgagagacUgCUCaCCCCg- -3'
miRNA:   3'- gCCCCGCC--UCGGGUU-------AgGAG-GGGGag -5'
33277 5' -63.8 NC_007605.1 + 114645 0.66 0.608688
Target:  5'- gGGGGCcuGGAGucgaucaccuuacCCCAggCCgaggCCCCUUCc -3'
miRNA:   3'- gCCCCG--CCUC-------------GGGUuaGGa---GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 101020 0.66 0.600022
Target:  5'- aCGuGGGCuGGA-CCCGGcucuUCCUCUCCCa- -3'
miRNA:   3'- -GC-CCCG-CCUcGGGUU----AGGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 115358 0.66 0.600022
Target:  5'- aGGGcCGGAcucccagcgugGCCCAA-CCUCugcuCCCCUCu -3'
miRNA:   3'- gCCCcGCCU-----------CGGGUUaGGAG----GGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 91168 0.66 0.59906
Target:  5'- gGGGGCGGguggcucaGGUCCAucuGUCCacauauggcugcuUCCUCCUUc -3'
miRNA:   3'- gCCCCGCC--------UCGGGU---UAGG-------------AGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 153946 0.66 0.590414
Target:  5'- aGGuuGGCGGGGCUCAGggCCUCCacgaaggCCUUg -3'
miRNA:   3'- gCC--CCGCCUCGGGUUa-GGAGGg------GGAG- -5'
33277 5' -63.8 NC_007605.1 + 110370 0.66 0.590414
Target:  5'- aGGGGUcagGGAuguGCCCAG--C-CCCCCUCa -3'
miRNA:   3'- gCCCCG---CCU---CGGGUUagGaGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 126411 0.66 0.589454
Target:  5'- gGGGGUGGAggggcgucucgacGCUCAGacUCCUCgUCUUCg -3'
miRNA:   3'- gCCCCGCCU-------------CGGGUU--AGGAGgGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 94863 0.66 0.580832
Target:  5'- uGGGGCGG-GUgU--UCCUCgUCCUCg -3'
miRNA:   3'- gCCCCGCCuCGgGuuAGGAGgGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 73161 0.66 0.580832
Target:  5'- uCGGGGUGGAGa-CGA-CCUCCgCCa- -3'
miRNA:   3'- -GCCCCGCCUCggGUUaGGAGGgGGag -5'
33277 5' -63.8 NC_007605.1 + 163007 0.66 0.571284
Target:  5'- uCGGcGGCaGGGGuCCCAgGUCC-CCUCCUg -3'
miRNA:   3'- -GCC-CCG-CCUC-GGGU-UAGGaGGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 40676 0.67 0.552307
Target:  5'- gGGuaGGCGGAGCCuCAGgagggUCCCCUCc -3'
miRNA:   3'- gCC--CCGCCUCGG-GUUagga-GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 143492 0.67 0.552307
Target:  5'- gGGuaGGCGGAGCCuCAGgagggUCCCCUCc -3'
miRNA:   3'- gCC--CCGCCUCGG-GUUagga-GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 40449 0.67 0.552307
Target:  5'- aCGGGGCGcgcuGGGCCgCGG-CUgCCCCCUg -3'
miRNA:   3'- -GCCCCGC----CUCGG-GUUaGGaGGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 63019 0.67 0.542889
Target:  5'- aGGGGCaGAcGCCCAG-CCaCCCCUg- -3'
miRNA:   3'- gCCCCGcCU-CGGGUUaGGaGGGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.