miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33278 5' -47.5 NC_007605.1 + 56994 0.66 0.999117
Target:  5'- cGACUCCaggcccccggGuGGGCUGGUUGGGg-- -3'
miRNA:   3'- -UUGAGG----------C-CCCGACUAGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 51288 0.66 0.999117
Target:  5'- gGGCUCUGuGGGCUGGg-AGGg-- -3'
miRNA:   3'- -UUGAGGC-CCCGACUagUCCaau -5'
33278 5' -47.5 NC_007605.1 + 72496 0.66 0.998909
Target:  5'- uGC-CCGGGuGCgUGGUCGGGa-- -3'
miRNA:   3'- uUGaGGCCC-CG-ACUAGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 123960 0.67 0.997612
Target:  5'- cAC-CCGGGGCUGAUCc----- -3'
miRNA:   3'- uUGaGGCCCCGACUAGuccaau -5'
33278 5' -47.5 NC_007605.1 + 56518 0.67 0.997612
Target:  5'- uGAgUCCaGGGCccUGGUCAGGggAa -3'
miRNA:   3'- -UUgAGGcCCCG--ACUAGUCCaaU- -5'
33278 5' -47.5 NC_007605.1 + 140631 0.67 0.997612
Target:  5'- gAGCUCgGGGGC-GGcCGGGUg- -3'
miRNA:   3'- -UUGAGgCCCCGaCUaGUCCAau -5'
33278 5' -47.5 NC_007605.1 + 54376 0.67 0.997612
Target:  5'- uACUCgGGGGUUGA--GGGUg- -3'
miRNA:   3'- uUGAGgCCCCGACUagUCCAau -5'
33278 5' -47.5 NC_007605.1 + 117598 0.67 0.997612
Target:  5'- gAGgUCCGGGcGCUGGaagagCAGGUc- -3'
miRNA:   3'- -UUgAGGCCC-CGACUa----GUCCAau -5'
33278 5' -47.5 NC_007605.1 + 125704 0.67 0.997137
Target:  5'- cACUCCGGGa--GAUCAGGa-- -3'
miRNA:   3'- uUGAGGCCCcgaCUAGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 171188 0.67 0.996587
Target:  5'- gGGCUCCGGGGgCUG--CGGGc-- -3'
miRNA:   3'- -UUGAGGCCCC-GACuaGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 170128 0.67 0.996587
Target:  5'- gGGCUCCGGGGgCUG--CGGGc-- -3'
miRNA:   3'- -UUGAGGCCCC-GACuaGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 108276 0.67 0.996587
Target:  5'- -gUUgCGGGGCUGucguacagCAGGUUGg -3'
miRNA:   3'- uuGAgGCCCCGACua------GUCCAAU- -5'
33278 5' -47.5 NC_007605.1 + 169591 0.67 0.996587
Target:  5'- gGGCUCCGGGGgCUG--CGGGc-- -3'
miRNA:   3'- -UUGAGGCCCC-GACuaGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 49225 0.68 0.995222
Target:  5'- ---aCCGuGGGCaUGAUCAGGg-- -3'
miRNA:   3'- uugaGGC-CCCG-ACUAGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 52961 0.68 0.99439
Target:  5'- uAGCUUgGGGGCguccggcuggGGUCAGGg-- -3'
miRNA:   3'- -UUGAGgCCCCGa---------CUAGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 155622 0.68 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
33278 5' -47.5 NC_007605.1 + 146415 0.68 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
33278 5' -47.5 NC_007605.1 + 143346 0.68 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
33278 5' -47.5 NC_007605.1 + 152553 0.68 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
33278 5' -47.5 NC_007605.1 + 158690 0.68 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.