miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33279 3' -53.7 NC_007605.1 + 150918 0.69 0.867831
Target:  5'- --uGGGGUGGGAcGGGGcAGGCGugauccuggGCGCAa -3'
miRNA:   3'- uguCCCCACCCU-CCUU-UCUGU---------UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 144307 0.66 0.965387
Target:  5'- aGCAGGGGcuuagugugucaUGGuGAGGc-AGGCAAgGCGa -3'
miRNA:   3'- -UGUCCCC------------ACC-CUCCuuUCUGUUgUGU- -5'
33279 3' -53.7 NC_007605.1 + 144082 0.69 0.896227
Target:  5'- uGCuGGGGUGGG-GGAuGGGCucAgGCAa -3'
miRNA:   3'- -UGuCCCCACCCuCCUuUCUGu-UgUGU- -5'
33279 3' -53.7 NC_007605.1 + 144043 0.76 0.529293
Target:  5'- -gGGGGGguaggGGGGGGAGGGAUuACACu -3'
miRNA:   3'- ugUCCCCa----CCCUCCUUUCUGuUGUGu -5'
33279 3' -53.7 NC_007605.1 + 139492 0.73 0.661928
Target:  5'- cGguGGGGUcgugacuauauagGGGAGGuAAGGCGACAUAu -3'
miRNA:   3'- -UguCCCCA-------------CCCUCCuUUCUGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 138409 0.76 0.519317
Target:  5'- cACGGcGGGUGGG-GGAAGGAgcUGACACGa -3'
miRNA:   3'- -UGUC-CCCACCCuCCUUUCU--GUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 137576 0.72 0.763603
Target:  5'- --uGGGGUGGcuggcgggcuGGGGGAGGCGGCGCAa -3'
miRNA:   3'- uguCCCCACCc---------UCCUUUCUGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 133595 0.67 0.941545
Target:  5'- -gGGGGGUccguGGGAGaGAuuGAGACuGCAUAc -3'
miRNA:   3'- ugUCCCCA----CCCUC-CU--UUCUGuUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 133530 0.71 0.782597
Target:  5'- gGCuGGGGaugGGGAGGGcGGGGCuGGCGCAg -3'
miRNA:   3'- -UGuCCCCa--CCCUCCU-UUCUG-UUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 132461 0.67 0.946109
Target:  5'- uCAGGGGcaGGuGAGGAAGauGACGACGg- -3'
miRNA:   3'- uGUCCCCa-CC-CUCCUUU--CUGUUGUgu -5'
33279 3' -53.7 NC_007605.1 + 127709 0.67 0.941545
Target:  5'- uAUAGGGGuUGGGGGccAGGAUGAgGCGa -3'
miRNA:   3'- -UGUCCCC-ACCCUCcuUUCUGUUgUGU- -5'
33279 3' -53.7 NC_007605.1 + 126414 0.71 0.791891
Target:  5'- aGCGGGGGUGGaGGGGcgucuCGACGCu -3'
miRNA:   3'- -UGUCCCCACC-CUCCuuucuGUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 117779 0.67 0.945664
Target:  5'- cGCAGGGGaggGGGcAGGAuuccccaaugauuGAGGCAAUg-- -3'
miRNA:   3'- -UGUCCCCa--CCC-UCCU-------------UUCUGUUGugu -5'
33279 3' -53.7 NC_007605.1 + 109000 0.67 0.954517
Target:  5'- -uGGGGGUGGcaagcccGGGAGAGACugcuCACc -3'
miRNA:   3'- ugUCCCCACCc------UCCUUUCUGuu--GUGu -5'
33279 3' -53.7 NC_007605.1 + 105651 0.77 0.480214
Target:  5'- -gAGGGG-GGGAGGAcGAGACGACGg- -3'
miRNA:   3'- ugUCCCCaCCCUCCU-UUCUGUUGUgu -5'
33279 3' -53.7 NC_007605.1 + 96486 0.66 0.965387
Target:  5'- gGCAGGaGGggcaggagcaGGAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCac--------CCUCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 96429 0.66 0.968564
Target:  5'- aGCAGGaGG-GGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCaCCcUCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 96375 0.7 0.818845
Target:  5'- aGCAGGaGGagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 96303 0.66 0.968564
Target:  5'- aGCAGGaGG-GGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCaCCcUCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 96222 0.68 0.926389
Target:  5'- aGCAGGaGGagGGGcAGGAGGGGCAggagGgGCAg -3'
miRNA:   3'- -UGUCC-CCa-CCC-UCCUUUCUGU----UgUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.