Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33279 | 5' | -59.4 | NC_007605.1 | + | 41844 | 1.08 | 0.00188 |
Target: 5'- uCUCGUACUGCCUGCCCACCCGGAGACc -3' miRNA: 3'- -GAGCAUGACGGACGGGUGGGCCUCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 158797 | 0.75 | 0.32248 |
Target: 5'- gUCGUACgugagGUaaaGCCCAUCCGGGGGCa -3' miRNA: 3'- gAGCAUGa----CGga-CGGGUGGGCCUCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 87451 | 0.72 | 0.460333 |
Target: 5'- -cCGUGgaGCCcGCCCACCCgaccccgguGGAGAUg -3' miRNA: 3'- gaGCAUgaCGGaCGGGUGGG---------CCUCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 71245 | 0.72 | 0.473037 |
Target: 5'- cCUUGUGCU-CCUGCCgGCCCcucgagauucugaccGGGGACc -3' miRNA: 3'- -GAGCAUGAcGGACGGgUGGG---------------CCUCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 49175 | 0.71 | 0.478536 |
Target: 5'- -aCGccgGCUGCCcaaGCCCACCCuccaggGGAGGCu -3' miRNA: 3'- gaGCa--UGACGGa--CGGGUGGG------CCUCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 169283 | 0.71 | 0.487769 |
Target: 5'- uUCccACaGCUUGCCC-CCCGGGGACc -3' miRNA: 3'- gAGcaUGaCGGACGGGuGGGCCUCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 65999 | 0.71 | 0.506481 |
Target: 5'- -cCGUGuCU-CCUGCCU-CCCGGAGGCu -3' miRNA: 3'- gaGCAU-GAcGGACGGGuGGGCCUCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 112350 | 0.7 | 0.5351 |
Target: 5'- cCUCGUGCcaggGCCUGUUguCCUGGGGGa -3' miRNA: 3'- -GAGCAUGa---CGGACGGguGGGCCUCUg -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 60285 | 0.69 | 0.593835 |
Target: 5'- gUCGgcCgugGCCaggGCCCACCUGGcGGCg -3' miRNA: 3'- gAGCauGa--CGGa--CGGGUGGGCCuCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 150756 | 0.69 | 0.600775 |
Target: 5'- uCUCGUGacccugaaagaUGCCUGgacgcuauucccccUCCACCCGGAGcACg -3' miRNA: 3'- -GAGCAUg----------ACGGAC--------------GGGUGGGCCUC-UG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 100846 | 0.69 | 0.61966 |
Target: 5'- -aCGUACUGCgcgggguccauuaUGgCCGCCCuGGGGACg -3' miRNA: 3'- gaGCAUGACGg------------ACgGGUGGG-CCUCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 45290 | 0.69 | 0.632603 |
Target: 5'- aCUC-UGCgagaGCCUcgggGCCCACCCGGAcgccaagGACa -3' miRNA: 3'- -GAGcAUGa---CGGA----CGGGUGGGCCU-------CUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 114616 | 0.69 | 0.633599 |
Target: 5'- gCUgGgaaGCaGCCccaaccaGCCCACCCGGGGGCc -3' miRNA: 3'- -GAgCa--UGaCGGa------CGGGUGGGCCUCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 100537 | 0.69 | 0.633599 |
Target: 5'- uUCGUcCUGCUcggUGCCCACCgGGAc-- -3' miRNA: 3'- gAGCAuGACGG---ACGGGUGGgCCUcug -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 106671 | 0.69 | 0.633599 |
Target: 5'- gUgGUGCagGCCUGCCagccgcCGCuuGGAGGCu -3' miRNA: 3'- gAgCAUGa-CGGACGG------GUGggCCUCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 135169 | 0.68 | 0.673341 |
Target: 5'- cCUC-UACUGCCuUGUCCACUgGGgugcAGACg -3' miRNA: 3'- -GAGcAUGACGG-ACGGGUGGgCC----UCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 161273 | 0.68 | 0.673341 |
Target: 5'- -cCGgcCUGCUUgcgcaGCCCAgcCCCGGGGGCc -3' miRNA: 3'- gaGCauGACGGA-----CGGGU--GGGCCUCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 65747 | 0.68 | 0.693052 |
Target: 5'- -gUGUACUGCCaGCCCAggUCCGcaaAGACa -3' miRNA: 3'- gaGCAUGACGGaCGGGU--GGGCc--UCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 126082 | 0.67 | 0.712571 |
Target: 5'- gUCGg---GCCcgGaCCCgGCCCGGAGACu -3' miRNA: 3'- gAGCaugaCGGa-C-GGG-UGGGCCUCUG- -5' |
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33279 | 5' | -59.4 | NC_007605.1 | + | 34066 | 0.67 | 0.71354 |
Target: 5'- cCUCGgggccaGCUGCCgggggGCCCugccugucucugcccCCCGGAGGg -3' miRNA: 3'- -GAGCa-----UGACGGa----CGGGu--------------GGGCCUCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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