miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33279 5' -59.4 NC_007605.1 + 158797 0.75 0.32248
Target:  5'- gUCGUACgugagGUaaaGCCCAUCCGGGGGCa -3'
miRNA:   3'- gAGCAUGa----CGga-CGGGUGGGCCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 158104 0.66 0.787374
Target:  5'- uCUUGUuCUGUaaGUccauaucaaCCACCCGGGGGCg -3'
miRNA:   3'- -GAGCAuGACGgaCG---------GGUGGGCCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 52447 0.66 0.782004
Target:  5'- gUCGuUGCUGCCgcgggugGuugagggcaugccccCCCuCCCGGAGGCu -3'
miRNA:   3'- gAGC-AUGACGGa------C---------------GGGuGGGCCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 135195 0.66 0.778399
Target:  5'- --gGgccuCUGCCgggaaGCCCACCCGGgccaGGGCc -3'
miRNA:   3'- gagCau--GACGGa----CGGGUGGGCC----UCUG- -5'
33279 5' -59.4 NC_007605.1 + 159255 0.67 0.741341
Target:  5'- cCUCGccgGCgcGCCUGUCCuCCCaGGGACc -3'
miRNA:   3'- -GAGCa--UGa-CGGACGGGuGGGcCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 122553 0.67 0.741341
Target:  5'- -aCGUGCUGaaaGUCCACCCcGAGGCc -3'
miRNA:   3'- gaGCAUGACggaCGGGUGGGcCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 40029 0.67 0.722237
Target:  5'- -gCGUGCcccgcuUGCCUgguccuggaGCUCAUCCGGGGAUg -3'
miRNA:   3'- gaGCAUG------ACGGA---------CGGGUGGGCCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 126082 0.67 0.712571
Target:  5'- gUCGg---GCCcgGaCCCgGCCCGGAGACu -3'
miRNA:   3'- gAGCaugaCGGa-C-GGG-UGGGCCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 161273 0.68 0.673341
Target:  5'- -cCGgcCUGCUUgcgcaGCCCAgcCCCGGGGGCc -3'
miRNA:   3'- gaGCauGACGGA-----CGGGU--GGGCCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 114616 0.69 0.633599
Target:  5'- gCUgGgaaGCaGCCccaaccaGCCCACCCGGGGGCc -3'
miRNA:   3'- -GAgCa--UGaCGGa------CGGGUGGGCCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 100537 0.69 0.633599
Target:  5'- uUCGUcCUGCUcggUGCCCACCgGGAc-- -3'
miRNA:   3'- gAGCAuGACGG---ACGGGUGGgCCUcug -5'
33279 5' -59.4 NC_007605.1 + 87451 0.72 0.460333
Target:  5'- -cCGUGgaGCCcGCCCACCCgaccccgguGGAGAUg -3'
miRNA:   3'- gaGCAUgaCGGaCGGGUGGG---------CCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 71245 0.72 0.473037
Target:  5'- cCUUGUGCU-CCUGCCgGCCCcucgagauucugaccGGGGACc -3'
miRNA:   3'- -GAGCAUGAcGGACGGgUGGG---------------CCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 49175 0.71 0.478536
Target:  5'- -aCGccgGCUGCCcaaGCCCACCCuccaggGGAGGCu -3'
miRNA:   3'- gaGCa--UGACGGa--CGGGUGGG------CCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 65999 0.71 0.506481
Target:  5'- -cCGUGuCU-CCUGCCU-CCCGGAGGCu -3'
miRNA:   3'- gaGCAU-GAcGGACGGGuGGGCCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 112350 0.7 0.5351
Target:  5'- cCUCGUGCcaggGCCUGUUguCCUGGGGGa -3'
miRNA:   3'- -GAGCAUGa---CGGACGGguGGGCCUCUg -5'
33279 5' -59.4 NC_007605.1 + 60285 0.69 0.593835
Target:  5'- gUCGgcCgugGCCaggGCCCACCUGGcGGCg -3'
miRNA:   3'- gAGCauGa--CGGa--CGGGUGGGCCuCUG- -5'
33279 5' -59.4 NC_007605.1 + 100846 0.69 0.61966
Target:  5'- -aCGUACUGCgcgggguccauuaUGgCCGCCCuGGGGACg -3'
miRNA:   3'- gaGCAUGACGg------------ACgGGUGGG-CCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 100439 0.66 0.804056
Target:  5'- uUgGUGCUGugccCCUGCCCGggcguacgugggaUCCGGAGGu -3'
miRNA:   3'- gAgCAUGAC----GGACGGGU-------------GGGCCUCUg -5'
33279 5' -59.4 NC_007605.1 + 169283 0.71 0.487769
Target:  5'- uUCccACaGCUUGCCC-CCCGGGGACc -3'
miRNA:   3'- gAGcaUGaCGGACGGGuGGGCCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.