miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33279 5' -59.4 NC_007605.1 + 4882 0.66 0.778399
Target:  5'- aCUCGUACUGCUcGCUgGCaaaGGAuGACc -3'
miRNA:   3'- -GAGCAUGACGGaCGGgUGgg-CCU-CUG- -5'
33279 5' -59.4 NC_007605.1 + 12583 0.67 0.71354
Target:  5'- cCUCGgggccaGCUGCCgggggGCCCugccugucucugcccCCCGGAGGg -3'
miRNA:   3'- -GAGCa-----UGACGGa----CGGGu--------------GGGCCUCUg -5'
33279 5' -59.4 NC_007605.1 + 15652 0.67 0.71354
Target:  5'- cCUCGgggccaGCUGCCgggggGCCCugccugucucugcccCCCGGAGGg -3'
miRNA:   3'- -GAGCa-----UGACGGa----CGGGu--------------GGGCCUCUg -5'
33279 5' -59.4 NC_007605.1 + 18721 0.67 0.71354
Target:  5'- cCUCGgggccaGCUGCCgggggGCCCugccugucucugcccCCCGGAGGg -3'
miRNA:   3'- -GAGCa-----UGACGGa----CGGGu--------------GGGCCUCUg -5'
33279 5' -59.4 NC_007605.1 + 21790 0.67 0.71354
Target:  5'- cCUCGgggccaGCUGCCgggggGCCCugccugucucugcccCCCGGAGGg -3'
miRNA:   3'- -GAGCa-----UGACGGa----CGGGu--------------GGGCCUCUg -5'
33279 5' -59.4 NC_007605.1 + 24859 0.67 0.71354
Target:  5'- cCUCGgggccaGCUGCCgggggGCCCugccugucucugcccCCCGGAGGg -3'
miRNA:   3'- -GAGCa-----UGACGGa----CGGGu--------------GGGCCUCUg -5'
33279 5' -59.4 NC_007605.1 + 27928 0.67 0.71354
Target:  5'- cCUCGgggccaGCUGCCgggggGCCCugccugucucugcccCCCGGAGGg -3'
miRNA:   3'- -GAGCa-----UGACGGa----CGGGu--------------GGGCCUCUg -5'
33279 5' -59.4 NC_007605.1 + 30997 0.67 0.71354
Target:  5'- cCUCGgggccaGCUGCCgggggGCCCugccugucucugcccCCCGGAGGg -3'
miRNA:   3'- -GAGCa-----UGACGGa----CGGGu--------------GGGCCUCUg -5'
33279 5' -59.4 NC_007605.1 + 34066 0.67 0.71354
Target:  5'- cCUCGgggccaGCUGCCgggggGCCCugccugucucugcccCCCGGAGGg -3'
miRNA:   3'- -GAGCa-----UGACGGa----CGGGu--------------GGGCCUCUg -5'
33279 5' -59.4 NC_007605.1 + 40029 0.67 0.722237
Target:  5'- -gCGUGCcccgcuUGCCUgguccuggaGCUCAUCCGGGGAUg -3'
miRNA:   3'- gaGCAUG------ACGGA---------CGGGUGGGCCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 41844 1.08 0.00188
Target:  5'- uCUCGUACUGCCUGCCCACCCGGAGACc -3'
miRNA:   3'- -GAGCAUGACGGACGGGUGGGCCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 45290 0.69 0.632603
Target:  5'- aCUC-UGCgagaGCCUcgggGCCCACCCGGAcgccaagGACa -3'
miRNA:   3'- -GAGcAUGa---CGGA----CGGGUGGGCCU-------CUG- -5'
33279 5' -59.4 NC_007605.1 + 49175 0.71 0.478536
Target:  5'- -aCGccgGCUGCCcaaGCCCACCCuccaggGGAGGCu -3'
miRNA:   3'- gaGCa--UGACGGa--CGGGUGGG------CCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 52447 0.66 0.782004
Target:  5'- gUCGuUGCUGCCgcgggugGuugagggcaugccccCCCuCCCGGAGGCu -3'
miRNA:   3'- gAGC-AUGACGGa------C---------------GGGuGGGCCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 60285 0.69 0.593835
Target:  5'- gUCGgcCgugGCCaggGCCCACCUGGcGGCg -3'
miRNA:   3'- gAGCauGa--CGGa--CGGGUGGGCCuCUG- -5'
33279 5' -59.4 NC_007605.1 + 65747 0.68 0.693052
Target:  5'- -gUGUACUGCCaGCCCAggUCCGcaaAGACa -3'
miRNA:   3'- gaGCAUGACGGaCGGGU--GGGCc--UCUG- -5'
33279 5' -59.4 NC_007605.1 + 65999 0.71 0.506481
Target:  5'- -cCGUGuCU-CCUGCCU-CCCGGAGGCu -3'
miRNA:   3'- gaGCAU-GAcGGACGGGuGGGCCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 71245 0.72 0.473037
Target:  5'- cCUUGUGCU-CCUGCCgGCCCcucgagauucugaccGGGGACc -3'
miRNA:   3'- -GAGCAUGAcGGACGGgUGGG---------------CCUCUG- -5'
33279 5' -59.4 NC_007605.1 + 76141 0.66 0.787374
Target:  5'- cCUCua--UGCCcGCCCACCCGaGGGuCa -3'
miRNA:   3'- -GAGcaugACGGaCGGGUGGGC-CUCuG- -5'
33279 5' -59.4 NC_007605.1 + 87451 0.72 0.460333
Target:  5'- -cCGUGgaGCCcGCCCACCCgaccccgguGGAGAUg -3'
miRNA:   3'- gaGCAUgaCGGaCGGGUGGG---------CCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.