miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 3' -57.5 NC_007605.1 + 30934 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 100409 0.69 0.724711
Target:  5'- gCCUCgAGcGUGUCCAUaaaguccccgaAGGUgCCGGUAUa -3'
miRNA:   3'- -GGAG-UC-CACAGGUG-----------UCCGgGGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 121566 0.69 0.705142
Target:  5'- aCCUgcCAGGUauGUCCugGGGUCCCGaaGCa -3'
miRNA:   3'- -GGA--GUCCA--CAGGugUCCGGGGUcaUG- -5'
33280 3' -57.5 NC_007605.1 + 12938 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 153895 0.69 0.743972
Target:  5'- cCCUCGGG-GUUgAgGGGCgCCCAG-GCg -3'
miRNA:   3'- -GGAGUCCaCAGgUgUCCG-GGGUCaUG- -5'
33280 3' -57.5 NC_007605.1 + 85175 0.7 0.662349
Target:  5'- aCCUgAGGUG-CCACccguuccccggcagAGGCCUCGGgggGCg -3'
miRNA:   3'- -GGAgUCCACaGGUG--------------UCCGGGGUCa--UG- -5'
33280 3' -57.5 NC_007605.1 + 138697 0.7 0.645274
Target:  5'- cCCUCcgcGGUGUCCGguGGUCCuCAacGUGCc -3'
miRNA:   3'- -GGAGu--CCACAGGUguCCGGG-GU--CAUG- -5'
33280 3' -57.5 NC_007605.1 + 88529 0.71 0.625152
Target:  5'- aCC-CAGG-GUCCAUGGGaUCCCAGgGCa -3'
miRNA:   3'- -GGaGUCCaCAGGUGUCC-GGGGUCaUG- -5'
33280 3' -57.5 NC_007605.1 + 16006 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 28282 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 31351 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 34420 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 85235 0.76 0.356129
Target:  5'- uCCUCAGGUG-CCGCccguuccccggcagAGGCCUCGGgggGCg -3'
miRNA:   3'- -GGAGUCCACaGGUG--------------UCCGGGGUCa--UG- -5'
33280 3' -57.5 NC_007605.1 + 12976 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 28321 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 31390 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 34459 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 3047 0.72 0.52207
Target:  5'- aUCUCGGGcuacgcgcgccCCcCGGGCCCCAGUGCu -3'
miRNA:   3'- -GGAGUCCaca--------GGuGUCCGGGGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 73301 0.71 0.595025
Target:  5'- uCCUUGGGauUCCACuGGCCCCGGc-- -3'
miRNA:   3'- -GGAGUCCacAGGUGuCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 113797 0.71 0.625152
Target:  5'- gCCacgCAGGaUGUUCACguGGGCCCCGGcACc -3'
miRNA:   3'- -GGa--GUCC-ACAGGUG--UCCGGGGUCaUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.