miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33283 5' -53.6 NC_007605.1 + 133356 0.66 0.976293
Target:  5'- aGCCCAGCCguucaCUCg--GCUcACCgGGa -3'
miRNA:   3'- -UGGGUCGGaa---GAGaugCGAaUGGaCC- -5'
33283 5' -53.6 NC_007605.1 + 117284 0.66 0.976293
Target:  5'- cGCCUAGCCUccuccCUCUACGUgUACgUUGa -3'
miRNA:   3'- -UGGGUCGGAa----GAGAUGCGaAUG-GACc -5'
33283 5' -53.6 NC_007605.1 + 149356 0.66 0.96791
Target:  5'- aACCCGGUCU--UCUACGUcUACCcacaggagUGGa -3'
miRNA:   3'- -UGGGUCGGAagAGAUGCGaAUGG--------ACC- -5'
33283 5' -53.6 NC_007605.1 + 73915 0.66 0.96791
Target:  5'- gGCCuCGGCCgaUCUCgUGCGCUacgucUAUUUGGc -3'
miRNA:   3'- -UGG-GUCGGa-AGAG-AUGCGA-----AUGGACC- -5'
33283 5' -53.6 NC_007605.1 + 52806 0.66 0.96791
Target:  5'- cAUCCGGCCUaCgCUGcCGCcuuCCUGGg -3'
miRNA:   3'- -UGGGUCGGAaGaGAU-GCGaauGGACC- -5'
33283 5' -53.6 NC_007605.1 + 163083 0.66 0.96791
Target:  5'- cGCCCAaCCUUCUUgccCGCUaUGCCUa- -3'
miRNA:   3'- -UGGGUcGGAAGAGau-GCGA-AUGGAcc -5'
33283 5' -53.6 NC_007605.1 + 77586 0.66 0.964698
Target:  5'- uUCCagGGCCUgacgCUugGCUgguggUGCCUGGg -3'
miRNA:   3'- uGGG--UCGGAaga-GAugCGA-----AUGGACC- -5'
33283 5' -53.6 NC_007605.1 + 40008 0.66 0.963692
Target:  5'- cACCCGGUUccCUCccccagggcgugcccCGCUUGCCUGGu -3'
miRNA:   3'- -UGGGUCGGaaGAGau-------------GCGAAUGGACC- -5'
33283 5' -53.6 NC_007605.1 + 64301 0.66 0.961268
Target:  5'- aGCCCGGCCUacgagcgcaucgUCUCca-GCggcUACCUGu -3'
miRNA:   3'- -UGGGUCGGA------------AGAGaugCGa--AUGGACc -5'
33283 5' -53.6 NC_007605.1 + 67887 0.67 0.945261
Target:  5'- aGCCCGGCCgugC-CUGCGUUgGCCa-- -3'
miRNA:   3'- -UGGGUCGGaa-GaGAUGCGAaUGGacc -5'
33283 5' -53.6 NC_007605.1 + 127371 0.67 0.944812
Target:  5'- uCCaCAGCCccaCUCUugccucgGCGCUgggacUGCCUGGg -3'
miRNA:   3'- uGG-GUCGGaa-GAGA-------UGCGA-----AUGGACC- -5'
33283 5' -53.6 NC_007605.1 + 98302 0.68 0.914057
Target:  5'- cCCCAGCCUgaggaacaUCUACGCggAgCUGc -3'
miRNA:   3'- uGGGUCGGAag------AGAUGCGaaUgGACc -5'
33283 5' -53.6 NC_007605.1 + 133252 0.69 0.908004
Target:  5'- gACCUggaugcuguaguGGCCUUCUCUGaug--GCCUGGa -3'
miRNA:   3'- -UGGG------------UCGGAAGAGAUgcgaaUGGACC- -5'
33283 5' -53.6 NC_007605.1 + 136628 0.69 0.908004
Target:  5'- cUCCGGCCUaCUUUG-GCUUGCCgGGc -3'
miRNA:   3'- uGGGUCGGAaGAGAUgCGAAUGGaCC- -5'
33283 5' -53.6 NC_007605.1 + 98641 0.69 0.901711
Target:  5'- cGCCCAGCCaaUgUCUGCGUgcgaGCCgGGc -3'
miRNA:   3'- -UGGGUCGGa-AgAGAUGCGaa--UGGaCC- -5'
33283 5' -53.6 NC_007605.1 + 42328 0.69 0.89518
Target:  5'- gACCCaAGCCUUgggcGCGCguugGCCUGGa -3'
miRNA:   3'- -UGGG-UCGGAAgagaUGCGaa--UGGACC- -5'
33283 5' -53.6 NC_007605.1 + 123384 0.69 0.888414
Target:  5'- uAUCCAGCCUUCuUCUACGUaguCgaGGc -3'
miRNA:   3'- -UGGGUCGGAAG-AGAUGCGaauGgaCC- -5'
33283 5' -53.6 NC_007605.1 + 153451 0.69 0.873459
Target:  5'- gACCCuGCCUUCacggaggUCUGUGUagGCCUGGu -3'
miRNA:   3'- -UGGGuCGGAAG-------AGAUGCGaaUGGACC- -5'
33283 5' -53.6 NC_007605.1 + 53913 0.7 0.843147
Target:  5'- aGCCCuGGCCUUagcuggggGCGCgggUGCCUGGc -3'
miRNA:   3'- -UGGG-UCGGAAgaga----UGCGa--AUGGACC- -5'
33283 5' -53.6 NC_007605.1 + 35307 0.71 0.826421
Target:  5'- gGCCCAGCCcccUCUCgcccaaGCuGCUUugauuCCUGGg -3'
miRNA:   3'- -UGGGUCGGa--AGAGa-----UG-CGAAu----GGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.