miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33286 3' -63.1 NC_007605.1 + 68186 0.66 0.570941
Target:  5'- --gUGUGGGGCCauaCgagGCCUUcaCUGGCCc -3'
miRNA:   3'- uaaGCGUCCCGGg--Ga--CGGAG--GACCGG- -5'
33286 3' -63.1 NC_007605.1 + 120492 0.66 0.609992
Target:  5'- --gUGcCAGGGCCCCUugg-CUUGGCCc -3'
miRNA:   3'- uaaGC-GUCCCGGGGAcggaGGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 51681 0.66 0.60019
Target:  5'- --gUGgGGGGCCUg-GCCUCCUuagguuuggcGGCCc -3'
miRNA:   3'- uaaGCgUCCCGGGgaCGGAGGA----------CCGG- -5'
33286 3' -63.1 NC_007605.1 + 22403 0.66 0.580658
Target:  5'- --cUGcCGGGGUCCCU-CCggCUGGCCu -3'
miRNA:   3'- uaaGC-GUCCCGGGGAcGGagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 71102 0.66 0.570941
Target:  5'- --aCGCGGGGCUCUgcacCCUggUGGCCa -3'
miRNA:   3'- uaaGCGUCCCGGGGac--GGAggACCGG- -5'
33286 3' -63.1 NC_007605.1 + 31610 0.66 0.580658
Target:  5'- --cUGcCGGGGUCCCU-CCggCUGGCCu -3'
miRNA:   3'- uaaGC-GUCCCGGGGAcGGagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 4130 0.66 0.590411
Target:  5'- --cCGUGGuGGCCUCUGUCUCC--GCCc -3'
miRNA:   3'- uaaGCGUC-CCGGGGACGGAGGacCGG- -5'
33286 3' -63.1 NC_007605.1 + 105057 0.66 0.561262
Target:  5'- --aCGC-GGGCCCgggUGCCUaCUgaUGGCCa -3'
miRNA:   3'- uaaGCGuCCCGGGg--ACGGA-GG--ACCGG- -5'
33286 3' -63.1 NC_007605.1 + 25472 0.66 0.580658
Target:  5'- --cUGcCGGGGUCCCU-CCggCUGGCCu -3'
miRNA:   3'- uaaGC-GUCCCGGGGAcGGagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 123146 0.66 0.561262
Target:  5'- ---aGCA-GGCCCUgaUGCg-CCUGGCCg -3'
miRNA:   3'- uaagCGUcCCGGGG--ACGgaGGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 129106 0.66 0.590411
Target:  5'- --cCGCcuGGUCCagcguUGCCUCCUggggGGCCa -3'
miRNA:   3'- uaaGCGucCCGGGg----ACGGAGGA----CCGG- -5'
33286 3' -63.1 NC_007605.1 + 19334 0.66 0.580658
Target:  5'- --cUGcCGGGGUCCCU-CCggCUGGCCu -3'
miRNA:   3'- uaaGC-GUCCCGGGGAcGGagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 34679 0.66 0.580658
Target:  5'- --cUGcCGGGGUCCCU-CCggCUGGCCu -3'
miRNA:   3'- uaaGC-GUCCCGGGGAcGGagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 28541 0.66 0.580658
Target:  5'- --cUGcCGGGGUCCCU-CCggCUGGCCu -3'
miRNA:   3'- uaaGC-GUCCCGGGGAcGGagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 124135 0.66 0.571911
Target:  5'- -cUCG-AGGGCCCCauaaucugguugucgGCCUCCUcacccaggaaGGUCa -3'
miRNA:   3'- uaAGCgUCCCGGGGa--------------CGGAGGA----------CCGG- -5'
33286 3' -63.1 NC_007605.1 + 64461 0.66 0.590411
Target:  5'- -gUCuCAGGGCagCCCUGCagcgggCCaGGCCg -3'
miRNA:   3'- uaAGcGUCCCG--GGGACGga----GGaCCGG- -5'
33286 3' -63.1 NC_007605.1 + 147923 0.66 0.609992
Target:  5'- --cCGU-GGGCCUUacCUUCCUGGCCa -3'
miRNA:   3'- uaaGCGuCCCGGGGacGGAGGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 61228 0.66 0.580658
Target:  5'- cUUCGCcGGGUCCucuccaacgagCUGCCcaaaacccgcUCuCUGGCCg -3'
miRNA:   3'- uAAGCGuCCCGGG-----------GACGG----------AG-GACCGG- -5'
33286 3' -63.1 NC_007605.1 + 71398 0.66 0.561262
Target:  5'- --aCGCAGccagaGGCCCCUGCCgaacaaaCCgUGGUUu -3'
miRNA:   3'- uaaGCGUC-----CCGGGGACGGa------GG-ACCGG- -5'
33286 3' -63.1 NC_007605.1 + 61178 0.66 0.609992
Target:  5'- --cCGCGGGGCCgCC-GCCaCCgcuGCCg -3'
miRNA:   3'- uaaGCGUCCCGG-GGaCGGaGGac-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.