miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33286 3' -63.1 NC_007605.1 + 45364 1.08 0.000772
Target:  5'- cAUUCGCAGGGCCCCUGCCUCCUGGCCc -3'
miRNA:   3'- -UAAGCGUCCCGGGGACGGAGGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 135190 0.79 0.097455
Target:  5'- --gCGCAGGGCCUCUGCCgggaagCCcacccgGGCCa -3'
miRNA:   3'- uaaGCGUCCCGGGGACGGa-----GGa-----CCGG- -5'
33286 3' -63.1 NC_007605.1 + 62932 0.78 0.10252
Target:  5'- -aUCGCGGGGCUgCUGCCcCCUccGGCCc -3'
miRNA:   3'- uaAGCGUCCCGGgGACGGaGGA--CCGG- -5'
33286 3' -63.1 NC_007605.1 + 87817 0.78 0.107832
Target:  5'- --cCGCGGGGCUCCUGCCgcggGGCCu -3'
miRNA:   3'- uaaGCGUCCCGGGGACGGaggaCCGG- -5'
33286 3' -63.1 NC_007605.1 + 40545 0.77 0.119239
Target:  5'- --gCGCGGGGUCCCUGCCuggcaccagggUCC-GGCCu -3'
miRNA:   3'- uaaGCGUCCCGGGGACGG-----------AGGaCCGG- -5'
33286 3' -63.1 NC_007605.1 + 143360 0.77 0.119239
Target:  5'- --gCGCGGGGUCCCUGCCuggcaccagggUCC-GGCCu -3'
miRNA:   3'- uaaGCGUCCCGGGGACGG-----------AGGaCCGG- -5'
33286 3' -63.1 NC_007605.1 + 87772 0.77 0.131761
Target:  5'- --cCGCGGGGCCuCCUGCCgcggGGCCu -3'
miRNA:   3'- uaaGCGUCCCGG-GGACGGaggaCCGG- -5'
33286 3' -63.1 NC_007605.1 + 126297 0.76 0.160504
Target:  5'- cUUCGCaggAGGGCCaCCaGUCUCCgGGCCg -3'
miRNA:   3'- uAAGCG---UCCCGG-GGaCGGAGGaCCGG- -5'
33286 3' -63.1 NC_007605.1 + 136921 0.76 0.160504
Target:  5'- ---aGCAGGGCCCCUGCuacacccaCUCggGGCCu -3'
miRNA:   3'- uaagCGUCCCGGGGACG--------GAGgaCCGG- -5'
33286 3' -63.1 NC_007605.1 + 81648 0.74 0.190169
Target:  5'- --aUGCAGGGCCCCgggGaaaCUUCUGGCa -3'
miRNA:   3'- uaaGCGUCCCGGGGa--Cg--GAGGACCGg -5'
33286 3' -63.1 NC_007605.1 + 91746 0.74 0.209207
Target:  5'- --gCGCGGGGCCUCgGC--CCUGGCCu -3'
miRNA:   3'- uaaGCGUCCCGGGGaCGgaGGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 153947 0.74 0.214216
Target:  5'- gGUUgGCGGGGCUCaggGCCUCCacgaaggccuUGGCCc -3'
miRNA:   3'- -UAAgCGUCCCGGGga-CGGAGG----------ACCGG- -5'
33286 3' -63.1 NC_007605.1 + 162087 0.74 0.219845
Target:  5'- -gUCGCAgguGGGCUCCccaugcaccaccuugGCCUCCUuGGCCg -3'
miRNA:   3'- uaAGCGU---CCCGGGGa--------------CGGAGGA-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 58298 0.72 0.263451
Target:  5'- --cCGCGGccccggccuccgcGGCCCCgGCCUCCgcGGCCc -3'
miRNA:   3'- uaaGCGUC-------------CCGGGGaCGGAGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 108058 0.72 0.282643
Target:  5'- ------cGGGCCUCUGUCUCCUGGUUg -3'
miRNA:   3'- uaagcguCCCGGGGACGGAGGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 87876 0.72 0.282643
Target:  5'- --cCGCuGGGCCuCCUGCCgcggGGCCu -3'
miRNA:   3'- uaaGCGuCCCGG-GGACGGaggaCCGG- -5'
33286 3' -63.1 NC_007605.1 + 67097 0.72 0.289066
Target:  5'- -cUUGCAGGGCCUCgucgGCCaugaUGGCCu -3'
miRNA:   3'- uaAGCGUCCCGGGGa---CGGagg-ACCGG- -5'
33286 3' -63.1 NC_007605.1 + 62243 0.72 0.289066
Target:  5'- --gCGUGGuGGCCUcgCUGCC-CCUGGCCc -3'
miRNA:   3'- uaaGCGUC-CCGGG--GACGGaGGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 24659 0.71 0.295603
Target:  5'- ---gGCAGGGCCCCccgGCag-CUGGCCc -3'
miRNA:   3'- uaagCGUCCCGGGGa--CGgagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 21590 0.71 0.295603
Target:  5'- ---gGCAGGGCCCCccgGCag-CUGGCCc -3'
miRNA:   3'- uaagCGUCCCGGGGa--CGgagGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.