miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33286 3' -63.1 NC_007605.1 + 4130 0.66 0.590411
Target:  5'- --cCGUGGuGGCCUCUGUCUCC--GCCc -3'
miRNA:   3'- uaaGCGUC-CCGGGGACGGAGGacCGG- -5'
33286 3' -63.1 NC_007605.1 + 4381 0.68 0.458862
Target:  5'- -aUCaGCgacgGGGGCCuggugaCCUGCCUgguggagauggcCCUGGCCg -3'
miRNA:   3'- uaAG-CG----UCCCGG------GGACGGA------------GGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 4862 0.67 0.542048
Target:  5'- --gCGCcccgggcaccaGGGGCCaugaaaGCCUCCUGGCg -3'
miRNA:   3'- uaaGCG-----------UCCCGGgga---CGGAGGACCGg -5'
33286 3' -63.1 NC_007605.1 + 12134 0.68 0.485893
Target:  5'- ---aGUAGGGCCgCCUGCCccCCUGcacCCa -3'
miRNA:   3'- uaagCGUCCCGG-GGACGGa-GGACc--GG- -5'
33286 3' -63.1 NC_007605.1 + 12383 0.71 0.295603
Target:  5'- ---gGCAGGGCCCCccgGCag-CUGGCCc -3'
miRNA:   3'- uaagCGUCCCGGGGa--CGgagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 13196 0.66 0.580658
Target:  5'- --cUGcCGGGGUCCCU-CCggCUGGCCu -3'
miRNA:   3'- uaaGC-GUCCCGGGGAcGGagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 13500 0.67 0.495071
Target:  5'- -cUCGCccgggcugccGGGGUCCCU-CCggCUGGCCu -3'
miRNA:   3'- uaAGCG----------UCCCGGGGAcGGagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 14763 0.66 0.609011
Target:  5'- --cCGgGGGGCCCggGCCggguuggUCCagGGCCu -3'
miRNA:   3'- uaaGCgUCCCGGGgaCGG-------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 15203 0.68 0.485893
Target:  5'- ---aGUAGGGCCgCCUGCCccCCUGcacCCa -3'
miRNA:   3'- uaagCGUCCCGG-GGACGGa-GGACc--GG- -5'
33286 3' -63.1 NC_007605.1 + 15452 0.71 0.295603
Target:  5'- ---gGCAGGGCCCCccgGCag-CUGGCCc -3'
miRNA:   3'- uaagCGUCCCGGGGa--CGgagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 16265 0.66 0.580658
Target:  5'- --cUGcCGGGGUCCCU-CCggCUGGCCu -3'
miRNA:   3'- uaaGC-GUCCCGGGGAcGGagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 16569 0.67 0.495071
Target:  5'- -cUCGCccgggcugccGGGGUCCCU-CCggCUGGCCu -3'
miRNA:   3'- uaAGCG----------UCCCGGGGAcGGagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 17832 0.66 0.609011
Target:  5'- --cCGgGGGGCCCggGCCggguuggUCCagGGCCu -3'
miRNA:   3'- uaaGCgUCCCGGGgaCGG-------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 18272 0.68 0.485893
Target:  5'- ---aGUAGGGCCgCCUGCCccCCUGcacCCa -3'
miRNA:   3'- uaagCGUCCCGG-GGACGGa-GGACc--GG- -5'
33286 3' -63.1 NC_007605.1 + 18521 0.71 0.295603
Target:  5'- ---gGCAGGGCCCCccgGCag-CUGGCCc -3'
miRNA:   3'- uaagCGUCCCGGGGa--CGgagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 19334 0.66 0.580658
Target:  5'- --cUGcCGGGGUCCCU-CCggCUGGCCu -3'
miRNA:   3'- uaaGC-GUCCCGGGGAcGGagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 19638 0.67 0.495071
Target:  5'- -cUCGCccgggcugccGGGGUCCCU-CCggCUGGCCu -3'
miRNA:   3'- uaAGCG----------UCCCGGGGAcGGagGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 20901 0.66 0.609011
Target:  5'- --cCGgGGGGCCCggGCCggguuggUCCagGGCCu -3'
miRNA:   3'- uaaGCgUCCCGGGgaCGG-------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 21341 0.68 0.485893
Target:  5'- ---aGUAGGGCCgCCUGCCccCCUGcacCCa -3'
miRNA:   3'- uaagCGUCCCGG-GGACGGa-GGACc--GG- -5'
33286 3' -63.1 NC_007605.1 + 21590 0.71 0.295603
Target:  5'- ---gGCAGGGCCCCccgGCag-CUGGCCc -3'
miRNA:   3'- uaagCGUCCCGGGGa--CGgagGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.