miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33286 5' -50.4 NC_007605.1 + 45330 1.11 0.006487
Target:  5'- uUGGACUAAGGCACAAGAAUGCCUCACg -3'
miRNA:   3'- -ACCUGAUUCCGUGUUCUUACGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 10630 0.81 0.413303
Target:  5'- gUGGGCgggaaGGGGCACAAGAAUGCCg-GCg -3'
miRNA:   3'- -ACCUGa----UUCCGUGUUCUUACGGagUG- -5'
33286 5' -50.4 NC_007605.1 + 32436 0.78 0.572804
Target:  5'- gUGGACaGGGGCGgGAGGGggcuggGCCUCACc -3'
miRNA:   3'- -ACCUGaUUCCGUgUUCUUa-----CGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 23229 0.78 0.572804
Target:  5'- gUGGACaGGGGCGgGAGGGggcuggGCCUCACc -3'
miRNA:   3'- -ACCUGaUUCCGUgUUCUUa-----CGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 26298 0.78 0.572804
Target:  5'- gUGGACaGGGGCGgGAGGGggcuggGCCUCACc -3'
miRNA:   3'- -ACCUGaUUCCGUgUUCUUa-----CGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 29367 0.78 0.572804
Target:  5'- gUGGACaGGGGCGgGAGGGggcuggGCCUCACc -3'
miRNA:   3'- -ACCUGaUUCCGUgUUCUUa-----CGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 17092 0.78 0.572804
Target:  5'- gUGGACaGGGGCGgGAGGGggcuggGCCUCACc -3'
miRNA:   3'- -ACCUGaUUCCGUgUUCUUa-----CGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 14023 0.78 0.572804
Target:  5'- gUGGACaGGGGCGgGAGGGggcuggGCCUCACc -3'
miRNA:   3'- -ACCUGaUUCCGUgUUCUUa-----CGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 20160 0.78 0.572804
Target:  5'- gUGGACaGGGGCGgGAGGGggcuggGCCUCACc -3'
miRNA:   3'- -ACCUGaUUCCGUgUUCUUa-----CGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 59087 0.77 0.626225
Target:  5'- cUGGACgagGGGGCGCGgcuGGAUGcCCUCAUg -3'
miRNA:   3'- -ACCUGa--UUCCGUGUu--CUUAC-GGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 146598 0.72 0.885094
Target:  5'- aGGGCgu-GGCACAGGggUgGCCgUACu -3'
miRNA:   3'- aCCUGauuCCGUGUUCuuA-CGGaGUG- -5'
33286 5' -50.4 NC_007605.1 + 32128 0.71 0.924044
Target:  5'- cUGGACUuuacagacAGuGCACAGGGAcuggGCCUCAg -3'
miRNA:   3'- -ACCUGAu-------UC-CGUGUUCUUa---CGGAGUg -5'
33286 5' -50.4 NC_007605.1 + 116370 0.71 0.929626
Target:  5'- aGGAg-GGGGCGCu-GAG-GCCUCACa -3'
miRNA:   3'- aCCUgaUUCCGUGuuCUUaCGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 130461 0.7 0.934944
Target:  5'- cUGGGCUAAGGCcUggGAccuuUGCCaUCAg -3'
miRNA:   3'- -ACCUGAUUCCGuGuuCUu---ACGG-AGUg -5'
33286 5' -50.4 NC_007605.1 + 159689 0.7 0.934944
Target:  5'- -cGGCUGGGGCACGAGAGcccgGCC-CGu -3'
miRNA:   3'- acCUGAUUCCGUGUUCUUa---CGGaGUg -5'
33286 5' -50.4 NC_007605.1 + 35197 0.7 0.94
Target:  5'- cUGGACUuuacagacAGuGCACAGGAGacuggGCCUCAg -3'
miRNA:   3'- -ACCUGAu-------UC-CGUGUUCUUa----CGGAGUg -5'
33286 5' -50.4 NC_007605.1 + 25991 0.7 0.94
Target:  5'- cUGGACUuuacagacAGuGCACAGGAGacuggGCCUCAg -3'
miRNA:   3'- -ACCUGAu-------UC-CGUGUUCUUa----CGGAGUg -5'
33286 5' -50.4 NC_007605.1 + 29060 0.7 0.94
Target:  5'- cUGGACUuuacagacAGuGCACAGGAGacuggGCCUCAg -3'
miRNA:   3'- -ACCUGAu-------UC-CGUGUUCUUa----CGGAGUg -5'
33286 5' -50.4 NC_007605.1 + 22922 0.7 0.94
Target:  5'- cUGGACUuuacagacAGuGCACAGGAGacuggGCCUCAg -3'
miRNA:   3'- -ACCUGAu-------UC-CGUGUUCUUa----CGGAGUg -5'
33286 5' -50.4 NC_007605.1 + 19853 0.7 0.94
Target:  5'- cUGGACUuuacagacAGuGCACAGGAGacuggGCCUCAg -3'
miRNA:   3'- -ACCUGAu-------UC-CGUGUUCUUa----CGGAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.