miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33286 5' -50.4 NC_007605.1 + 53831 0.68 0.981555
Target:  5'- cGGccGCUGcccGGGC-CAGGGcgGCCUCGa -3'
miRNA:   3'- aCC--UGAU---UCCGuGUUCUuaCGGAGUg -5'
33286 5' -50.4 NC_007605.1 + 16034 0.68 0.974224
Target:  5'- aGGuCaGGGGCACcucAGggUGCCUCc- -3'
miRNA:   3'- aCCuGaUUCCGUGu--UCuuACGGAGug -5'
33286 5' -50.4 NC_007605.1 + 19103 0.68 0.974224
Target:  5'- aGGuCaGGGGCACcucAGggUGCCUCc- -3'
miRNA:   3'- aCCuGaUUCCGUGu--UCuuACGGAGug -5'
33286 5' -50.4 NC_007605.1 + 22172 0.68 0.974224
Target:  5'- aGGuCaGGGGCACcucAGggUGCCUCc- -3'
miRNA:   3'- aCCuGaUUCCGUGu--UCuuACGGAGug -5'
33286 5' -50.4 NC_007605.1 + 25241 0.68 0.974224
Target:  5'- aGGuCaGGGGCACcucAGggUGCCUCc- -3'
miRNA:   3'- aCCuGaUUCCGUGu--UCuuACGGAGug -5'
33286 5' -50.4 NC_007605.1 + 28310 0.68 0.974224
Target:  5'- aGGuCaGGGGCACcucAGggUGCCUCc- -3'
miRNA:   3'- aCCuGaUUCCGUGu--UCuuACGGAGug -5'
33286 5' -50.4 NC_007605.1 + 31379 0.68 0.974224
Target:  5'- aGGuCaGGGGCACcucAGggUGCCUCc- -3'
miRNA:   3'- aCCuGaUUCCGUGu--UCuuACGGAGug -5'
33286 5' -50.4 NC_007605.1 + 34448 0.68 0.974224
Target:  5'- aGGuCaGGGGCACcucAGggUGCCUCc- -3'
miRNA:   3'- aCCuGaUUCCGUGu--UCuuACGGAGug -5'
33286 5' -50.4 NC_007605.1 + 111884 0.68 0.980902
Target:  5'- aGGGCauacacacaccuggUGAGGUgugcCAGGAAUGCCUCu- -3'
miRNA:   3'- aCCUG--------------AUUCCGu---GUUCUUACGGAGug -5'
33286 5' -50.4 NC_007605.1 + 51295 0.69 0.968284
Target:  5'- gUGGGCUGGGaGgGCcAGAG-GCCUCAg -3'
miRNA:   3'- -ACCUGAUUC-CgUGuUCUUaCGGAGUg -5'
33286 5' -50.4 NC_007605.1 + 59353 0.69 0.964631
Target:  5'- cGGACUGcgucugcGGGgGCAGGAG-GUCUCAa -3'
miRNA:   3'- aCCUGAU-------UCCgUGUUCUUaCGGAGUg -5'
33286 5' -50.4 NC_007605.1 + 121044 0.69 0.957646
Target:  5'- gGaGGCUGAGaGUGCgGGGAAUGCCUCcuGCa -3'
miRNA:   3'- aC-CUGAUUC-CGUG-UUCUUACGGAG--UG- -5'
33286 5' -50.4 NC_007605.1 + 130461 0.7 0.934944
Target:  5'- cUGGGCUAAGGCcUggGAccuuUGCCaUCAg -3'
miRNA:   3'- -ACCUGAUUCCGuGuuCUu---ACGG-AGUg -5'
33286 5' -50.4 NC_007605.1 + 169999 0.7 0.944795
Target:  5'- gGGGgUGGGGCAUggGGG-GCCgCGCa -3'
miRNA:   3'- aCCUgAUUCCGUGuuCUUaCGGaGUG- -5'
33286 5' -50.4 NC_007605.1 + 171059 0.7 0.944795
Target:  5'- gGGGgUGGGGCAUggGGG-GCCgCGCa -3'
miRNA:   3'- aCCUgAUUCCGUGuuCUUaCGGaGUG- -5'
33286 5' -50.4 NC_007605.1 + 75032 0.7 0.946641
Target:  5'- aUGGACgagaccggugccuGGGCGCAAGAGaucucggccguUGUCUCAUc -3'
miRNA:   3'- -ACCUGau-----------UCCGUGUUCUU-----------ACGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 56232 0.7 0.949333
Target:  5'- gGGcACUGAGGCgGCGGGAGggGCCcCAUa -3'
miRNA:   3'- aCC-UGAUUCCG-UGUUCUUa-CGGaGUG- -5'
33286 5' -50.4 NC_007605.1 + 70695 0.7 0.949333
Target:  5'- cGGGCcguGGCACAggugauguagaAGAGUuGCUUCACa -3'
miRNA:   3'- aCCUGauuCCGUGU-----------UCUUA-CGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 169459 0.7 0.953615
Target:  5'- cGGcuuGCUGGGGCAUggGGG-GCCgCGCa -3'
miRNA:   3'- aCC---UGAUUCCGUGuuCUUaCGGaGUG- -5'
33286 5' -50.4 NC_007605.1 + 439 0.69 0.957646
Target:  5'- cGGACUAcaAGGCAUuuacgguuAGuGUGCCUCu- -3'
miRNA:   3'- aCCUGAU--UCCGUGu-------UCuUACGGAGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.