miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33286 5' -50.4 NC_007605.1 + 439 0.69 0.957646
Target:  5'- cGGACUAcaAGGCAUuuacgguuAGuGUGCCUCu- -3'
miRNA:   3'- aCCUGAU--UCCGUGu-------UCuUACGGAGug -5'
33286 5' -50.4 NC_007605.1 + 2656 0.7 0.94
Target:  5'- gUGGGCUGAaggaccaaguGGCcCGAGuaAGUGUCUCGCa -3'
miRNA:   3'- -ACCUGAUU----------CCGuGUUC--UUACGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 5320 0.67 0.9883
Target:  5'- gGGGCUGcguccugccuuguuGGGUGCAAGGcucGUGCCUgGg -3'
miRNA:   3'- aCCUGAU--------------UCCGUGUUCU---UACGGAgUg -5'
33286 5' -50.4 NC_007605.1 + 9859 0.66 0.995232
Target:  5'- aGGACUuuaAGGGCuACcuuGGAUGCCagGCc -3'
miRNA:   3'- aCCUGA---UUCCG-UGuu-CUUACGGagUG- -5'
33286 5' -50.4 NC_007605.1 + 10630 0.81 0.413303
Target:  5'- gUGGGCgggaaGGGGCACAAGAAUGCCg-GCg -3'
miRNA:   3'- -ACCUGa----UUCCGUGUUCUUACGGagUG- -5'
33286 5' -50.4 NC_007605.1 + 12966 0.67 0.98549
Target:  5'- aGGuC-AGGGCACcucAGggUGCCUCc- -3'
miRNA:   3'- aCCuGaUUCCGUGu--UCuuACGGAGug -5'
33286 5' -50.4 NC_007605.1 + 13251 0.67 0.990015
Target:  5'- cUGGGCUcugaagcccggggAAGGgGCGAGGAaccgGCCUCu- -3'
miRNA:   3'- -ACCUGA-------------UUCCgUGUUCUUa---CGGAGug -5'
33286 5' -50.4 NC_007605.1 + 13715 0.7 0.94
Target:  5'- cUGGACUuuacagacAGuGCACAGGAGacuggGCCUCAg -3'
miRNA:   3'- -ACCUGAu-------UC-CGUGUUCUUa----CGGAGUg -5'
33286 5' -50.4 NC_007605.1 + 13828 0.66 0.99593
Target:  5'- gGGACUGGGGUggacacagggggGCGGGGAUGgCC-CGg -3'
miRNA:   3'- aCCUGAUUCCG------------UGUUCUUAC-GGaGUg -5'
33286 5' -50.4 NC_007605.1 + 14023 0.78 0.572804
Target:  5'- gUGGACaGGGGCGgGAGGGggcuggGCCUCACc -3'
miRNA:   3'- -ACCUGaUUCCGUgUUCUUa-----CGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 16034 0.68 0.974224
Target:  5'- aGGuCaGGGGCACcucAGggUGCCUCc- -3'
miRNA:   3'- aCCuGaUUCCGUGu--UCuuACGGAGug -5'
33286 5' -50.4 NC_007605.1 + 16320 0.67 0.990015
Target:  5'- cUGGGCUcugaagcccggggAAGGgGCGAGGAaccgGCCUCu- -3'
miRNA:   3'- -ACCUGA-------------UUCCgUGUUCUUa---CGGAGug -5'
33286 5' -50.4 NC_007605.1 + 16784 0.7 0.94
Target:  5'- cUGGACUuuacagacAGuGCACAGGAGacuggGCCUCAg -3'
miRNA:   3'- -ACCUGAu-------UC-CGUGUUCUUa----CGGAGUg -5'
33286 5' -50.4 NC_007605.1 + 16897 0.66 0.99593
Target:  5'- gGGACUGGGGUggacacagggggGCGGGGAUGgCC-CGg -3'
miRNA:   3'- aCCUGAUUCCG------------UGUUCUUAC-GGaGUg -5'
33286 5' -50.4 NC_007605.1 + 17092 0.78 0.572804
Target:  5'- gUGGACaGGGGCGgGAGGGggcuggGCCUCACc -3'
miRNA:   3'- -ACCUGaUUCCGUgUUCUUa-----CGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 19103 0.68 0.974224
Target:  5'- aGGuCaGGGGCACcucAGggUGCCUCc- -3'
miRNA:   3'- aCCuGaUUCCGUGu--UCuuACGGAGug -5'
33286 5' -50.4 NC_007605.1 + 19389 0.67 0.990015
Target:  5'- cUGGGCUcugaagcccggggAAGGgGCGAGGAaccgGCCUCu- -3'
miRNA:   3'- -ACCUGA-------------UUCCgUGUUCUUa---CGGAGug -5'
33286 5' -50.4 NC_007605.1 + 19853 0.7 0.94
Target:  5'- cUGGACUuuacagacAGuGCACAGGAGacuggGCCUCAg -3'
miRNA:   3'- -ACCUGAu-------UC-CGUGUUCUUa----CGGAGUg -5'
33286 5' -50.4 NC_007605.1 + 19966 0.66 0.99593
Target:  5'- gGGACUGGGGUggacacagggggGCGGGGAUGgCC-CGg -3'
miRNA:   3'- aCCUGAUUCCG------------UGUUCUUAC-GGaGUg -5'
33286 5' -50.4 NC_007605.1 + 20160 0.78 0.572804
Target:  5'- gUGGACaGGGGCGgGAGGGggcuggGCCUCACc -3'
miRNA:   3'- -ACCUGaUUCCGUgUUCUUa-----CGGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.