miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 5' -55.7 NC_007605.1 + 119502 0.66 0.918921
Target:  5'- cGCAUAccucGCUCuucAUCCAGGaggGGGCCAu -3'
miRNA:   3'- -UGUAU----CGAGuc-UAGGUCCg--UCCGGUc -5'
33288 5' -55.7 NC_007605.1 + 53768 0.66 0.918921
Target:  5'- cGCAgauGCccCGGAUCCAcuuGGCGGcuGCCAGg -3'
miRNA:   3'- -UGUau-CGa-GUCUAGGU---CCGUC--CGGUC- -5'
33288 5' -55.7 NC_007605.1 + 50446 0.66 0.918921
Target:  5'- uGCAUuccGGCUCGGAgCCuGGCGcgcGGCCc- -3'
miRNA:   3'- -UGUA---UCGAGUCUaGGuCCGU---CCGGuc -5'
33288 5' -55.7 NC_007605.1 + 148938 0.66 0.913066
Target:  5'- gGCAagGGCUCA---CCAGGgAGGCCuGg -3'
miRNA:   3'- -UGUa-UCGAGUcuaGGUCCgUCCGGuC- -5'
33288 5' -55.7 NC_007605.1 + 160614 0.66 0.913066
Target:  5'- ---cAGCUCGG--CCA-GCAGGCCGGc -3'
miRNA:   3'- uguaUCGAGUCuaGGUcCGUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 28819 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 22681 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 25750 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 34957 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 13474 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 31888 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 16543 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 19612 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 92066 0.66 0.900631
Target:  5'- cACGUAGCUCcucuGUCC-GGCGuGGCUGGa -3'
miRNA:   3'- -UGUAUCGAGuc--UAGGuCCGU-CCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 40143 0.66 0.900631
Target:  5'- ---cAGC-CGGcaAUCCAGGCguaccGGGCCAGc -3'
miRNA:   3'- uguaUCGaGUC--UAGGUCCG-----UCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 40063 0.66 0.900631
Target:  5'- cCAgaggAGCccCAGAaCCAGGCAaGCCGGg -3'
miRNA:   3'- uGUa---UCGa-GUCUaGGUCCGUcCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 61936 0.66 0.894055
Target:  5'- ---aAGC-CGGAgCCGGGCggcgucaaAGGCCAGg -3'
miRNA:   3'- uguaUCGaGUCUaGGUCCG--------UCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 46509 0.66 0.887245
Target:  5'- uCAUuGCUCGGAUUguGGCAG-CCGa -3'
miRNA:   3'- uGUAuCGAGUCUAGguCCGUCcGGUc -5'
33288 5' -55.7 NC_007605.1 + 135067 0.67 0.872938
Target:  5'- gACcUGGCUCAGGUCCGGcgcccugcGCAGuCCAa -3'
miRNA:   3'- -UGuAUCGAGUCUAGGUC--------CGUCcGGUc -5'
33288 5' -55.7 NC_007605.1 + 75579 0.67 0.857748
Target:  5'- --uUGGCccCAGAUCUcucuuuAGGUGGGCCAGc -3'
miRNA:   3'- uguAUCGa-GUCUAGG------UCCGUCCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.