miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 5' -55.7 NC_007605.1 + 127122 0.71 0.680959
Target:  5'- gAUAcAGCUgGGAUCCAGGCgcaggagggAGGCgCAGu -3'
miRNA:   3'- -UGUaUCGAgUCUAGGUCCG---------UCCG-GUC- -5'
33288 5' -55.7 NC_007605.1 + 31888 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 25750 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 50446 0.66 0.918921
Target:  5'- uGCAUuccGGCUCGGAgCCuGGCGcgcGGCCc- -3'
miRNA:   3'- -UGUA---UCGAGUCUaGGuCCGU---CCGGuc -5'
33288 5' -55.7 NC_007605.1 + 127287 0.69 0.78923
Target:  5'- aGCGUuacGGCcCAGuauGUCCAGGCGGGUCu- -3'
miRNA:   3'- -UGUA---UCGaGUC---UAGGUCCGUCCGGuc -5'
33288 5' -55.7 NC_007605.1 + 89112 0.69 0.78923
Target:  5'- -aGUAGCUUGGGaacaCCGGGCAGGuCCGu -3'
miRNA:   3'- ugUAUCGAGUCUa---GGUCCGUCC-GGUc -5'
33288 5' -55.7 NC_007605.1 + 76828 0.68 0.833416
Target:  5'- -----uCUCAGAcUCCAGGCGaGCCAGg -3'
miRNA:   3'- uguaucGAGUCU-AGGUCCGUcCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 132613 0.68 0.833416
Target:  5'- cCAUGGCU-GGAuuUCCAGGaaaggAGGCCGGc -3'
miRNA:   3'- uGUAUCGAgUCU--AGGUCCg----UCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 47814 1.07 0.003559
Target:  5'- cACAUAGCUCAGAUCCAGGCAGGCCAGc -3'
miRNA:   3'- -UGUAUCGAGUCUAGGUCCGUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 34957 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 75579 0.67 0.857748
Target:  5'- --uUGGCccCAGAUCUcucuuuAGGUGGGCCAGc -3'
miRNA:   3'- uguAUCGa-GUCUAGG------UCCGUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 84942 0.68 0.841724
Target:  5'- ---aGGgUCAGGUCCugGGGCAGGCa-- -3'
miRNA:   3'- uguaUCgAGUCUAGG--UCCGUCCGguc -5'
33288 5' -55.7 NC_007605.1 + 122728 0.7 0.710498
Target:  5'- cACGUGGCcCAGAcCCuGGCcuacaacGGGCCAGc -3'
miRNA:   3'- -UGUAUCGaGUCUaGGuCCG-------UCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 40063 0.66 0.900631
Target:  5'- cCAgaggAGCccCAGAaCCAGGCAaGCCGGg -3'
miRNA:   3'- uGUa---UCGa-GUCUaGGUCCGUcCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 122125 0.69 0.751226
Target:  5'- ---aAGCUCaAGAUCCacccaGGGguGGCCAu -3'
miRNA:   3'- uguaUCGAG-UCUAGG-----UCCguCCGGUc -5'
33288 5' -55.7 NC_007605.1 + 67366 0.68 0.841724
Target:  5'- ---cAGCUCcuGGAUCCAGGU-GGCCc- -3'
miRNA:   3'- uguaUCGAG--UCUAGGUCCGuCCGGuc -5'
33288 5' -55.7 NC_007605.1 + 40143 0.66 0.900631
Target:  5'- ---cAGC-CGGcaAUCCAGGCguaccGGGCCAGc -3'
miRNA:   3'- uguaUCGaGUC--UAGGUCCG-----UCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 28819 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 42858 0.69 0.779923
Target:  5'- uAC-UGGCUCAGuUCCccGCAGGCCc- -3'
miRNA:   3'- -UGuAUCGAGUCuAGGucCGUCCGGuc -5'
33288 5' -55.7 NC_007605.1 + 123582 0.68 0.824921
Target:  5'- uACAuUGGCagGGAUgCCGGGgagaGGGCCAGg -3'
miRNA:   3'- -UGU-AUCGagUCUA-GGUCCg---UCCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.