miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33290 3' -62 NC_007605.1 + 171797 0.68 0.574062
Target:  5'- aCC-CCCCcAUGCCCCCGCCa------ -3'
miRNA:   3'- -GGaGGGGaUGCGGGGGCGGgcagaaa -5'
33290 3' -62 NC_007605.1 + 171568 0.67 0.632315
Target:  5'- aCCgCCUCUcUGUCCCCGCCCccuGUCa-- -3'
miRNA:   3'- -GGaGGGGAuGCGGGGGCGGG---CAGaaa -5'
33290 3' -62 NC_007605.1 + 171477 0.66 0.690542
Target:  5'- --cCCCCUGCGaCCCUGCCCccucaucacgGUCa-- -3'
miRNA:   3'- ggaGGGGAUGCgGGGGCGGG----------CAGaaa -5'
33290 3' -62 NC_007605.1 + 171352 0.67 0.603101
Target:  5'- cCCgaCCCCc-CGCCgCCCGCCCGcCg-- -3'
miRNA:   3'- -GGa-GGGGauGCGG-GGGCGGGCaGaaa -5'
33290 3' -62 NC_007605.1 + 171030 0.67 0.632315
Target:  5'- aCCgCCUCUcUGUCCCCGCCCccuGUCa-- -3'
miRNA:   3'- -GGaGGGGAuGCGGGGGCGGG---CAGaaa -5'
33290 3' -62 NC_007605.1 + 170939 0.66 0.690542
Target:  5'- --cCCCCUGCGaCCCUGCCCccucaucacgGUCa-- -3'
miRNA:   3'- ggaGGGGAUGCgGGGGCGGG----------CAGaaa -5'
33290 3' -62 NC_007605.1 + 170815 0.67 0.603101
Target:  5'- cCCgaCCCCc-CGCCgCCCGCCCGcCg-- -3'
miRNA:   3'- -GGa-GGGGauGCGG-GGGCGGGCaGaaa -5'
33290 3' -62 NC_007605.1 + 170508 0.67 0.632315
Target:  5'- aCCgCCUCUcUGUCCCCGCCCccuGUCa-- -3'
miRNA:   3'- -GGaGGGGAuGCGGGGGCGGG---CAGaaa -5'
33290 3' -62 NC_007605.1 + 170417 0.66 0.690542
Target:  5'- --cCCCCUGCGaCCCUGCCCccucaucacgGUCa-- -3'
miRNA:   3'- ggaGGGGAUGCgGGGGCGGG----------CAGaaa -5'
33290 3' -62 NC_007605.1 + 170292 0.67 0.603101
Target:  5'- cCCgaCCCCc-CGCCgCCCGCCCGcCg-- -3'
miRNA:   3'- -GGa-GGGGauGCGG-GGGCGGGCaGaaa -5'
33290 3' -62 NC_007605.1 + 169970 0.67 0.632315
Target:  5'- aCCgCCUCUcUGUCCCCGCCCccuGUCa-- -3'
miRNA:   3'- -GGaGGGGAuGCGGGGGCGGG---CAGaaa -5'
33290 3' -62 NC_007605.1 + 169879 0.66 0.690542
Target:  5'- --cCCCCUGCGaCCCUGCCCccucaucacgGUCa-- -3'
miRNA:   3'- ggaGGGGAUGCgGGGGCGGG----------CAGaaa -5'
33290 3' -62 NC_007605.1 + 169755 0.67 0.603101
Target:  5'- cCCgaCCCCc-CGCCgCCCGCCCGcCg-- -3'
miRNA:   3'- -GGa-GGGGauGCGG-GGGCGGGCaGaaa -5'
33290 3' -62 NC_007605.1 + 169485 0.66 0.661525
Target:  5'- gCCUCCCCUACGguuaCCCCacaGCCuUGcCUc- -3'
miRNA:   3'- -GGAGGGGAUGC----GGGGg--CGG-GCaGAaa -5'
33290 3' -62 NC_007605.1 + 169409 0.72 0.363558
Target:  5'- aCCUCCCaacguUGCGCgCCCCGCgCC-UCUUUg -3'
miRNA:   3'- -GGAGGGg----AUGCG-GGGGCG-GGcAGAAA- -5'
33290 3' -62 NC_007605.1 + 160024 0.69 0.517133
Target:  5'- cCCUCCUCUGgGCCgCCCGgCCuCGcCUUc -3'
miRNA:   3'- -GGAGGGGAUgCGG-GGGC-GG-GCaGAAa -5'
33290 3' -62 NC_007605.1 + 159548 0.66 0.680904
Target:  5'- gCCUCCuCCU-CGCCUCgGCCCa----- -3'
miRNA:   3'- -GGAGG-GGAuGCGGGGgCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 154725 0.67 0.611855
Target:  5'- uCCUCCuUCUugGCCCCCaguagguGCCUGgCUa- -3'
miRNA:   3'- -GGAGG-GGAugCGGGGG-------CGGGCaGAaa -5'
33290 3' -62 NC_007605.1 + 154662 0.72 0.3412
Target:  5'- gCCgagCCgCCUGCGCCCCUcgggGCCCGUg--- -3'
miRNA:   3'- -GGa--GG-GGAUGCGGGGG----CGGGCAgaaa -5'
33290 3' -62 NC_007605.1 + 154103 0.69 0.526481
Target:  5'- cCCUCCCCggACGCCUgggCGCCCcUCa-- -3'
miRNA:   3'- -GGAGGGGa-UGCGGGg--GCGGGcAGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.