miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33290 3' -62 NC_007605.1 + 48628 1.06 0.001685
Target:  5'- uCCUCCCCUACGCCCCCGCCCGUCUUUc -3'
miRNA:   3'- -GGAGGGGAUGCGGGGGCGGGCAGAAA- -5'
33290 3' -62 NC_007605.1 + 4407 0.67 0.622568
Target:  5'- gCCaUCCCCgcaACGCaCCgcaaucaggagaCUGCCCGUCUUc -3'
miRNA:   3'- -GG-AGGGGa--UGCG-GG------------GGCGGGCAGAAa -5'
33290 3' -62 NC_007605.1 + 171030 0.67 0.632315
Target:  5'- aCCgCCUCUcUGUCCCCGCCCccuGUCa-- -3'
miRNA:   3'- -GGaGGGGAuGCGGGGGCGGG---CAGaaa -5'
33290 3' -62 NC_007605.1 + 69534 0.66 0.694386
Target:  5'- aUCUCCCCgggcgcagaaaaugcUGCGUCUCCGCUCGa---- -3'
miRNA:   3'- -GGAGGGG---------------AUGCGGGGGCGGGCagaaa -5'
33290 3' -62 NC_007605.1 + 44405 0.7 0.427965
Target:  5'- cUCUCCCCcggGCgcuGCCUUCGCCUGUCUc- -3'
miRNA:   3'- -GGAGGGGa--UG---CGGGGGCGGGCAGAaa -5'
33290 3' -62 NC_007605.1 + 54038 0.69 0.480455
Target:  5'- gCUCCCCUcgaggcCGCCCUgGCCCGg---- -3'
miRNA:   3'- gGAGGGGAu-----GCGGGGgCGGGCagaaa -5'
33290 3' -62 NC_007605.1 + 154103 0.69 0.526481
Target:  5'- cCCUCCCCggACGCCUgggCGCCCcUCa-- -3'
miRNA:   3'- -GGAGGGGa-UGCGGGg--GCGGGcAGaaa -5'
33290 3' -62 NC_007605.1 + 59874 0.68 0.545359
Target:  5'- cCCUCaCCCgugggacaaACGCCCCCGCCauUCc-- -3'
miRNA:   3'- -GGAG-GGGa--------UGCGGGGGCGGgcAGaaa -5'
33290 3' -62 NC_007605.1 + 171797 0.68 0.574062
Target:  5'- aCC-CCCCcAUGCCCCCGCCa------ -3'
miRNA:   3'- -GGaGGGGaUGCGGGGGCGGgcagaaa -5'
33290 3' -62 NC_007605.1 + 52309 0.67 0.609908
Target:  5'- gCUCCCCaggGCGgagggacucgagguCCCCCGCgaaaccCCGUCUUc -3'
miRNA:   3'- gGAGGGGa--UGC--------------GGGGGCG------GGCAGAAa -5'
33290 3' -62 NC_007605.1 + 170815 0.67 0.603101
Target:  5'- cCCgaCCCCc-CGCCgCCCGCCCGcCg-- -3'
miRNA:   3'- -GGa-GGGGauGCGG-GGGCGGGCaGaaa -5'
33290 3' -62 NC_007605.1 + 61428 0.68 0.55488
Target:  5'- cCCUCCCCUGuaaGCCCCCccuacucCCCGg---- -3'
miRNA:   3'- -GGAGGGGAUg--CGGGGGc------GGGCagaaa -5'
33290 3' -62 NC_007605.1 + 66580 0.73 0.292971
Target:  5'- cCCUCCCCUGgGCCCuuGCUCaugauGUCa-- -3'
miRNA:   3'- -GGAGGGGAUgCGGGggCGGG-----CAGaaa -5'
33290 3' -62 NC_007605.1 + 170292 0.67 0.603101
Target:  5'- cCCgaCCCCc-CGCCgCCCGCCCGcCg-- -3'
miRNA:   3'- -GGa-GGGGauGCGG-GGGCGGGCaGaaa -5'
33290 3' -62 NC_007605.1 + 37415 0.73 0.319852
Target:  5'- cCCUgCCCCUGCcccuGCCCCUGCCCcUCc-- -3'
miRNA:   3'- -GGA-GGGGAUG----CGGGGGCGGGcAGaaa -5'
33290 3' -62 NC_007605.1 + 81873 0.68 0.55488
Target:  5'- gCCUCCa--ACGCUCCCGCgCgCGUCUa- -3'
miRNA:   3'- -GGAGGggaUGCGGGGGCG-G-GCAGAaa -5'
33290 3' -62 NC_007605.1 + 169755 0.67 0.603101
Target:  5'- cCCgaCCCCc-CGCCgCCCGCCCGcCg-- -3'
miRNA:   3'- -GGa-GGGGauGCGG-GGGCGGGCaGaaa -5'
33290 3' -62 NC_007605.1 + 171568 0.67 0.632315
Target:  5'- aCCgCCUCUcUGUCCCCGCCCccuGUCa-- -3'
miRNA:   3'- -GGaGGGGAuGCGGGGGCGGG---CAGaaa -5'
33290 3' -62 NC_007605.1 + 169409 0.72 0.363558
Target:  5'- aCCUCCCaacguUGCGCgCCCCGCgCC-UCUUUg -3'
miRNA:   3'- -GGAGGGg----AUGCG-GGGGCG-GGcAGAAA- -5'
33290 3' -62 NC_007605.1 + 50860 0.69 0.506929
Target:  5'- gCCUCCCCacggccgucgggcUGCGaCCCCgugCGCCCGUg--- -3'
miRNA:   3'- -GGAGGGG-------------AUGC-GGGG---GCGGGCAgaaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.