Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33294 | 3' | -60.5 | NC_007605.1 | + | 141444 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 141546 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142871 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 141036 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 140934 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 141342 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 141240 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 141138 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 141648 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 140833 | 0.75 | 0.298463 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCga-GCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 78781 | 0.74 | 0.305155 |
Target: 5'- uCUCGGGucUUGGCacgGCCCCCAagaCACUCa -3' miRNA: 3'- -GGGCCCu-AACCGg--CGGGGGUa--GUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 15857 | 0.74 | 0.333067 |
Target: 5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3' miRNA: 3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 18926 | 0.74 | 0.333067 |
Target: 5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3' miRNA: 3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 21994 | 0.74 | 0.333067 |
Target: 5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3' miRNA: 3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 25063 | 0.74 | 0.333067 |
Target: 5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3' miRNA: 3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 28132 | 0.74 | 0.333067 |
Target: 5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3' miRNA: 3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 31201 | 0.74 | 0.333067 |
Target: 5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3' miRNA: 3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 34270 | 0.74 | 0.333067 |
Target: 5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3' miRNA: 3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 12788 | 0.74 | 0.333067 |
Target: 5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3' miRNA: 3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 58327 | 0.73 | 0.378352 |
Target: 5'- aCCGGGcgUccccGCCGCcuCCCCAUCACUg -3' miRNA: 3'- gGGCCCuaAc---CGGCG--GGGGUAGUGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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