Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33296 | 3' | -55 | NC_007605.1 | + | 51673 | 1.1 | 0.004236 |
Target: 5'- cCCCCGAAUCCACGCAACGUCCAGGAGc -3' miRNA: 3'- -GGGGCUUAGGUGCGUUGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 53775 | 0.8 | 0.302397 |
Target: 5'- gCCCCGGAUCCACuuGGCGgcugCCAGGGa -3' miRNA: 3'- -GGGGCUUAGGUGcgUUGCa---GGUCCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 162891 | 0.78 | 0.402061 |
Target: 5'- cCCCCGucauGUCCACGCAGCGga-GGGAc -3' miRNA: 3'- -GGGGCu---UAGGUGCGUUGCaggUCCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 19774 | 0.73 | 0.659717 |
Target: 5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3' miRNA: 3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 149961 | 0.73 | 0.66976 |
Target: 5'- gUCCUGAAUCCGCGCAGCcuGUUCAuaGAGa -3' miRNA: 3'- -GGGGCUUAGGUGCGUUG--CAGGUc-CUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 13636 | 0.73 | 0.659717 |
Target: 5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3' miRNA: 3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 32049 | 0.73 | 0.659717 |
Target: 5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3' miRNA: 3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 35118 | 0.73 | 0.659717 |
Target: 5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3' miRNA: 3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 16705 | 0.73 | 0.659717 |
Target: 5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3' miRNA: 3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 28980 | 0.73 | 0.659717 |
Target: 5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3' miRNA: 3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 25912 | 0.73 | 0.659717 |
Target: 5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3' miRNA: 3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 22843 | 0.73 | 0.659717 |
Target: 5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3' miRNA: 3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 5495 | 0.72 | 0.696703 |
Target: 5'- gCCCCGGAggCCACGCAGCaugacagagcugguGgucgCCGGGAu -3' miRNA: 3'- -GGGGCUUa-GGUGCGUUG--------------Ca---GGUCCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 61997 | 0.72 | 0.71936 |
Target: 5'- cCCCCGcuggccUCCGCGUAcACGcCCAGGAu -3' miRNA: 3'- -GGGGCuu----AGGUGCGU-UGCaGGUCCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 101558 | 0.71 | 0.757785 |
Target: 5'- gCCgCCGAGUUCAgGCGAaccaaGcCCAGGGGg -3' miRNA: 3'- -GG-GGCUUAGGUgCGUUg----CaGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 105574 | 0.71 | 0.757785 |
Target: 5'- gCCCUGA--CCGCGCGuCGaggcCCAGGAGg -3' miRNA: 3'- -GGGGCUuaGGUGCGUuGCa---GGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 13773 | 0.7 | 0.84827 |
Target: 5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3' miRNA: 3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 104747 | 0.7 | 0.845118 |
Target: 5'- gCCUCGggUCuCGcCGCuaguugguccAGgGUCCAGGAGa -3' miRNA: 3'- -GGGGCuuAG-GU-GCG----------UUgCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 62982 | 0.7 | 0.820549 |
Target: 5'- gUCCGAAUUCACGCGggACGUUCGuGGGc -3' miRNA: 3'- gGGGCUUAGGUGCGU--UGCAGGU-CCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 32186 | 0.7 | 0.84827 |
Target: 5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3' miRNA: 3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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