miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33296 3' -55 NC_007605.1 + 171412 0.66 0.963724
Target:  5'- cCCCCG-AUCCcCGgAACGUCCGc--- -3'
miRNA:   3'- -GGGGCuUAGGuGCgUUGCAGGUccuc -5'
33296 3' -55 NC_007605.1 + 170874 0.66 0.963724
Target:  5'- cCCCCG-AUCCcCGgAACGUCCGc--- -3'
miRNA:   3'- -GGGGCuUAGGuGCgUUGCAGGUccuc -5'
33296 3' -55 NC_007605.1 + 170352 0.66 0.963724
Target:  5'- cCCCCG-AUCCcCGgAACGUCCGc--- -3'
miRNA:   3'- -GGGGCuUAGGuGCgUUGCAGGUccuc -5'
33296 3' -55 NC_007605.1 + 169815 0.66 0.963724
Target:  5'- cCCCCG-AUCCcCGgAACGUCCGc--- -3'
miRNA:   3'- -GGGGCuUAGGuGCgUUGCAGGUccuc -5'
33296 3' -55 NC_007605.1 + 162891 0.78 0.402061
Target:  5'- cCCCCGucauGUCCACGCAGCGga-GGGAc -3'
miRNA:   3'- -GGGGCu---UAGGUGCGUUGCaggUCCUc -5'
33296 3' -55 NC_007605.1 + 161474 0.67 0.925094
Target:  5'- cCCCCGGGgcugggCUGCGCAAgcaGgCCGGGGGc -3'
miRNA:   3'- -GGGGCUUa-----GGUGCGUUg--CaGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 160121 0.67 0.944525
Target:  5'- gCUCCGGAUUCACcgGCAcCG-CCAGGuGg -3'
miRNA:   3'- -GGGGCUUAGGUG--CGUuGCaGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 159758 0.67 0.939084
Target:  5'- -aCCGAG-CCAUGCAGCGguugggccgaggCgAGGAGg -3'
miRNA:   3'- ggGGCUUaGGUGCGUUGCa-----------GgUCCUC- -5'
33296 3' -55 NC_007605.1 + 157668 0.68 0.895608
Target:  5'- aCCUGcucuUCgAUGCAuugaagGCGUCCGGGAGc -3'
miRNA:   3'- gGGGCuu--AGgUGCGU------UGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 153505 0.66 0.956703
Target:  5'- gCCCCaGAUCCAcgacCGCAuccaguACGUCUuuguGGAGc -3'
miRNA:   3'- -GGGGcUUAGGU----GCGU------UGCAGGu---CCUC- -5'
33296 3' -55 NC_007605.1 + 152644 0.68 0.895608
Target:  5'- cCCCCGggUCCAC-CGugGggacCCuGGuGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUugCa---GGuCCuC- -5'
33296 3' -55 NC_007605.1 + 150807 0.68 0.901961
Target:  5'- gCCCGGG-CCGCcCAcCGcCCGGGAGg -3'
miRNA:   3'- gGGGCUUaGGUGcGUuGCaGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 150332 0.69 0.863566
Target:  5'- aCCCCGGAggagcCCAUGCAgcacuaGCGUCCcggcgcucgucguucAGGAa -3'
miRNA:   3'- -GGGGCUUa----GGUGCGU------UGCAGG---------------UCCUc -5'
33296 3' -55 NC_007605.1 + 149961 0.73 0.66976
Target:  5'- gUCCUGAAUCCGCGCAGCcuGUUCAuaGAGa -3'
miRNA:   3'- -GGGGCUUAGGUGCGUUG--CAGGUc-CUC- -5'
33296 3' -55 NC_007605.1 + 137896 0.69 0.875222
Target:  5'- cCUCCGggUCCACuGCAAUuacucUgCAGGGGa -3'
miRNA:   3'- -GGGGCuuAGGUG-CGUUGc----AgGUCCUC- -5'
33296 3' -55 NC_007605.1 + 137088 0.68 0.889031
Target:  5'- -gCCGAGUCCACGaucccugaGGCGggagcagCCGGGAa -3'
miRNA:   3'- ggGGCUUAGGUGCg-------UUGCa------GGUCCUc -5'
33296 3' -55 NC_007605.1 + 134179 0.65 0.966919
Target:  5'- gCCCCGGgcacGUUCAgCGCGGcCGUCguGGGc -3'
miRNA:   3'- -GGGGCU----UAGGU-GCGUU-GCAGguCCUc -5'
33296 3' -55 NC_007605.1 + 133976 0.66 0.952867
Target:  5'- gCCCaCGAcggCCGCGCugAACGUgcCCGGGGc -3'
miRNA:   3'- -GGG-GCUua-GGUGCG--UUGCA--GGUCCUc -5'
33296 3' -55 NC_007605.1 + 132627 0.65 0.966919
Target:  5'- aCCCCGGgugggAUCCAUGgCugGAUuUCCAGGAa -3'
miRNA:   3'- -GGGGCU-----UAGGUGC-G--UUGcAGGUCCUc -5'
33296 3' -55 NC_007605.1 + 132233 0.66 0.952867
Target:  5'- aCCCCGAAgCCcCGUAg---CCGGGAGu -3'
miRNA:   3'- -GGGGCUUaGGuGCGUugcaGGUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.