miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33296 3' -55 NC_007605.1 + 51673 1.1 0.004236
Target:  5'- cCCCCGAAUCCACGCAACGUCCAGGAGc -3'
miRNA:   3'- -GGGGCUUAGGUGCGUUGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 40029 0.67 0.934785
Target:  5'- gCCCUGGgggagggAUCgGCGgGGCugggGUCCAGGGGa -3'
miRNA:   3'- -GGGGCU-------UAGgUGCgUUG----CAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 159758 0.67 0.939084
Target:  5'- -aCCGAG-CCAUGCAGCGguugggccgaggCgAGGAGg -3'
miRNA:   3'- ggGGCUUaGGUGCGUUGCa-----------GgUCCUC- -5'
33296 3' -55 NC_007605.1 + 132627 0.65 0.966919
Target:  5'- aCCCCGGgugggAUCCAUGgCugGAUuUCCAGGAa -3'
miRNA:   3'- -GGGGCU-----UAGGUGC-G--UUGcAGGUCCUc -5'
33296 3' -55 NC_007605.1 + 101558 0.71 0.757785
Target:  5'- gCCgCCGAGUUCAgGCGAaccaaGcCCAGGGGg -3'
miRNA:   3'- -GG-GGCUUAGGUgCGUUg----CaGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 40392 0.7 0.820549
Target:  5'- cCCCUGccAGUCgGCGCGGgGUCcCAGGAc -3'
miRNA:   3'- -GGGGC--UUAGgUGCGUUgCAG-GUCCUc -5'
33296 3' -55 NC_007605.1 + 31110 0.7 0.828915
Target:  5'- aCCCCGGG-CCACcCGGCGgagCCAGGc- -3'
miRNA:   3'- -GGGGCUUaGGUGcGUUGCa--GGUCCuc -5'
33296 3' -55 NC_007605.1 + 2354 0.7 0.836295
Target:  5'- gCCCaucUCCACGCGaagcacguacgugGCGcCCAGGAGu -3'
miRNA:   3'- gGGGcuuAGGUGCGU-------------UGCaGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 150332 0.69 0.863566
Target:  5'- aCCCCGGAggagcCCAUGCAgcacuaGCGUCCcggcgcucgucguucAGGAa -3'
miRNA:   3'- -GGGGCUUa----GGUGCGU------UGCAGG---------------UCCUc -5'
33296 3' -55 NC_007605.1 + 161474 0.67 0.925094
Target:  5'- cCCCCGGGgcugggCUGCGCAAgcaGgCCGGGGGc -3'
miRNA:   3'- -GGGGCUUa-----GGUGCGUUg--CaGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 116889 0.69 0.882234
Target:  5'- gCCCGcGUCUACGUGGCGgu-GGGAGg -3'
miRNA:   3'- gGGGCuUAGGUGCGUUGCaggUCCUC- -5'
33296 3' -55 NC_007605.1 + 47381 0.69 0.86057
Target:  5'- aCCCCGAGU--GCGUGACG-CCAGGc- -3'
miRNA:   3'- -GGGGCUUAggUGCGUUGCaGGUCCuc -5'
33296 3' -55 NC_007605.1 + 162891 0.78 0.402061
Target:  5'- cCCCCGucauGUCCACGCAGCGga-GGGAc -3'
miRNA:   3'- -GGGGCu---UAGGUGCGUUGCaggUCCUc -5'
33296 3' -55 NC_007605.1 + 152644 0.68 0.895608
Target:  5'- cCCCCGggUCCAC-CGugGggacCCuGGuGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUugCa---GGuCCuC- -5'
33296 3' -55 NC_007605.1 + 149961 0.73 0.66976
Target:  5'- gUCCUGAAUCCGCGCAGCcuGUUCAuaGAGa -3'
miRNA:   3'- -GGGGCUUAGGUGCGUUG--CAGGUc-CUC- -5'
33296 3' -55 NC_007605.1 + 54034 0.69 0.852941
Target:  5'- cCCUCGAggCCGCccuggcccggGCAGCGgCCGGGAa -3'
miRNA:   3'- -GGGGCUuaGGUG----------CGUUGCaGGUCCUc -5'
33296 3' -55 NC_007605.1 + 150807 0.68 0.901961
Target:  5'- gCCCGGG-CCGCcCAcCGcCCGGGAGg -3'
miRNA:   3'- gGGGCUUaGGUGcGUuGCaGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 54229 0.67 0.935272
Target:  5'- -gCCGAgGUCCGgGCGcuggaagagcAgGUCCGGGAGa -3'
miRNA:   3'- ggGGCU-UAGGUgCGU----------UgCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 5495 0.72 0.696703
Target:  5'- gCCCCGGAggCCACGCAGCaugacagagcugguGgucgCCGGGAu -3'
miRNA:   3'- -GGGGCUUa-GGUGCGUUG--------------Ca---GGUCCUc -5'
33296 3' -55 NC_007605.1 + 76024 0.7 0.823916
Target:  5'- cCUCCaGAAcagcggcgcuacaacUCCACGCuGCGUCCAucGGAGc -3'
miRNA:   3'- -GGGG-CUU---------------AGGUGCGuUGCAGGU--CCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.