miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33297 3' -65.3 NC_007605.1 + 142858 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 141125 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 143163 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 142654 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 143265 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 141227 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 141329 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 141839 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 142042 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 141940 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 141737 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 141635 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 141533 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 141431 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 142450 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 142348 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 142246 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 142144 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 142552 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 142756 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.