miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33297 3' -65.3 NC_007605.1 + 52526 1.09 0.000532
Target:  5'- cCCGAGCCGCCCUCUGGCCGCACCCCGa -3'
miRNA:   3'- -GGCUCGGCGGGAGACCGGCGUGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 53819 0.76 0.132338
Target:  5'- aUGAGCCGUUC-CcGGCCGCugCCCGg -3'
miRNA:   3'- gGCUCGGCGGGaGaCCGGCGugGGGC- -5'
33297 3' -65.3 NC_007605.1 + 160905 0.75 0.149093
Target:  5'- cCUGGGCUGCCC-CgGGCC-CACCCCa -3'
miRNA:   3'- -GGCUCGGCGGGaGaCCGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 46853 0.75 0.156321
Target:  5'- -gGAGCUGCCC-CUGGagaacacaUGCGCCCCGg -3'
miRNA:   3'- ggCUCGGCGGGaGACCg-------GCGUGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 156258 0.75 0.167757
Target:  5'- uCCG-GCCGCCCUCUGaGCUGCucucuuuuGCUCCu -3'
miRNA:   3'- -GGCuCGGCGGGAGAC-CGGCG--------UGGGGc -5'
33297 3' -65.3 NC_007605.1 + 61209 0.75 0.171733
Target:  5'- aCGAGCUGCCCaaaacccgcucUCUGGCCGC-CCUg- -3'
miRNA:   3'- gGCUCGGCGGG-----------AGACCGGCGuGGGgc -5'
33297 3' -65.3 NC_007605.1 + 160006 0.74 0.184169
Target:  5'- cCCGGGCCcgggaccgcGCCCUCcucugGGCCGCccgGCCUCGc -3'
miRNA:   3'- -GGCUCGG---------CGGGAGa----CCGGCG---UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 38609 0.73 0.211439
Target:  5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3'
miRNA:   3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 39858 0.73 0.211439
Target:  5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3'
miRNA:   3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 39733 0.73 0.211439
Target:  5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3'
miRNA:   3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 39608 0.73 0.211439
Target:  5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3'
miRNA:   3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 38734 0.73 0.211439
Target:  5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3'
miRNA:   3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 38859 0.73 0.211439
Target:  5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3'
miRNA:   3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 38984 0.73 0.211439
Target:  5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3'
miRNA:   3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 39358 0.73 0.211439
Target:  5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3'
miRNA:   3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 39483 0.73 0.211439
Target:  5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3'
miRNA:   3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 38484 0.73 0.211439
Target:  5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3'
miRNA:   3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 39233 0.73 0.211439
Target:  5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3'
miRNA:   3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 143265 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 143163 0.73 0.225826
Target:  5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3'
miRNA:   3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.