miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33297 3' -65.3 NC_007605.1 + 2504 0.66 0.577052
Target:  5'- cCCG-GCCaccagaaggGCCCUCUGGaaGC-CCgCCGc -3'
miRNA:   3'- -GGCuCGG---------CGGGAGACCggCGuGG-GGC- -5'
33297 3' -65.3 NC_007605.1 + 2886 0.71 0.307861
Target:  5'- gCCGGGCCGCCgCcCUGGCaucUGCUCCGg -3'
miRNA:   3'- -GGCUCGGCGG-GaGACCGgc-GUGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 3011 0.68 0.442817
Target:  5'- cUCGAGCUGUUCUC-GGCCcuGUACCCgGc -3'
miRNA:   3'- -GGCUCGGCGGGAGaCCGG--CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 10907 0.66 0.530731
Target:  5'- uUCGcaaGGCCGCCCUCcuuagccGaGCCGCccgGCuCCCGg -3'
miRNA:   3'- -GGC---UCGGCGGGAGa------C-CGGCG---UG-GGGC- -5'
33297 3' -65.3 NC_007605.1 + 12009 0.67 0.459771
Target:  5'- cCUGGGCCucuaagGCCCUCgGGUCccccuGgACCCCGg -3'
miRNA:   3'- -GGCUCGG------CGGGAGaCCGG-----CgUGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 12157 0.69 0.402035
Target:  5'- aCCcAGUaccUGcCCCUCuUGGCCacGCACCCCGg -3'
miRNA:   3'- -GGcUCG---GC-GGGAG-ACCGG--CGUGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 12386 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 12856 0.67 0.459771
Target:  5'- cUCGGGCCcgccuccaggcGCCCUcCUGGucuCCGCuCCCCu -3'
miRNA:   3'- -GGCUCGG-----------CGGGA-GACC---GGCGuGGGGc -5'
33297 3' -65.3 NC_007605.1 + 12931 0.68 0.426221
Target:  5'- -gGAGCCaCCCUCggGGCCcagGCCCCa -3'
miRNA:   3'- ggCUCGGcGGGAGa-CCGGcg-UGGGGc -5'
33297 3' -65.3 NC_007605.1 + 13026 0.69 0.371178
Target:  5'- cCCGGGCgGCCCcagaGGCCGguuccuCGCCCCu -3'
miRNA:   3'- -GGCUCGgCGGGaga-CCGGC------GUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 13202 0.7 0.321865
Target:  5'- cCCGGGCUGCCggggucccuccggCUGGCCugggacccggggagGCACCCUGa -3'
miRNA:   3'- -GGCUCGGCGGga-----------GACCGG--------------CGUGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 13609 0.67 0.467512
Target:  5'- aCCGGGCCGCcggggucCCUCcGGCCgGCcugauggaCCCGg -3'
miRNA:   3'- -GGCUCGGCG-------GGAGaCCGG-CGug------GGGC- -5'
33297 3' -65.3 NC_007605.1 + 13619 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 15226 0.69 0.402035
Target:  5'- aCCcAGUaccUGcCCCUCuUGGCCacGCACCCCGg -3'
miRNA:   3'- -GGcUCG---GC-GGGAG-ACCGG--CGUGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 15455 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 15925 0.67 0.459771
Target:  5'- cUCGGGCCcgccuccaggcGCCCUcCUGGucuCCGCuCCCCu -3'
miRNA:   3'- -GGCUCGG-----------CGGGA-GACC---GGCGuGGGGc -5'
33297 3' -65.3 NC_007605.1 + 15999 0.68 0.426221
Target:  5'- -gGAGCCaCCCUCggGGCCcagGCCCCa -3'
miRNA:   3'- ggCUCGGcGGGAGa-CCGGcg-UGGGGc -5'
33297 3' -65.3 NC_007605.1 + 16095 0.69 0.371178
Target:  5'- cCCGGGCgGCCCcagaGGCCGguuccuCGCCCCu -3'
miRNA:   3'- -GGCUCGgCGGGaga-CCGGC------GUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 16271 0.7 0.321865
Target:  5'- cCCGGGCUGCCggggucccuccggCUGGCCugggacccggggagGCACCCUGa -3'
miRNA:   3'- -GGCUCGGCGGga-----------GACCGG--------------CGUGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 16678 0.67 0.467512
Target:  5'- aCCGGGCCGCcggggucCCUCcGGCCgGCcugauggaCCCGg -3'
miRNA:   3'- -GGCUCGGCG-------GGAGaCCGG-CGug------GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.