miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33297 3' -65.3 NC_007605.1 + 21593 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 2504 0.66 0.577052
Target:  5'- cCCG-GCCaccagaaggGCCCUCUGGaaGC-CCgCCGc -3'
miRNA:   3'- -GGCuCGG---------CGGGAGACCggCGuGG-GGC- -5'
33297 3' -65.3 NC_007605.1 + 160467 0.66 0.52162
Target:  5'- gCUGGGCCGCUUUCgGGgCGUAagUCCCa -3'
miRNA:   3'- -GGCUCGGCGGGAGaCCgGCGU--GGGGc -5'
33297 3' -65.3 NC_007605.1 + 27731 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 30800 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 16688 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 19757 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 24662 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 12386 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 159682 0.66 0.549119
Target:  5'- aCCGcGUCGCCCgagGaGCUGUagACCCCGc -3'
miRNA:   3'- -GGCuCGGCGGGagaC-CGGCG--UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 32032 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 28963 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 35101 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 22826 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 25895 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 50368 0.66 0.536225
Target:  5'- gUGGGCUGCCCccgaggacgggcgCcGGCCGCcagcGCCCCc -3'
miRNA:   3'- gGCUCGGCGGGa------------GaCCGGCG----UGGGGc -5'
33297 3' -65.3 NC_007605.1 + 60289 0.66 0.577052
Target:  5'- gCCGuGGCCaggGCCCacCUGGCgGCGgcgUCCCGg -3'
miRNA:   3'- -GGC-UCGG---CGGGa-GACCGgCGU---GGGGC- -5'
33297 3' -65.3 NC_007605.1 + 18524 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 33869 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 13619 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.