miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33297 3' -65.3 NC_007605.1 + 13026 0.69 0.371178
Target:  5'- cCCGGGCgGCCCcagaGGCCGguuccuCGCCCCu -3'
miRNA:   3'- -GGCUCGgCGGGaga-CCGGC------GUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 38797 0.69 0.36372
Target:  5'- gCCGggcGGCCGCCgguggguccgCUgGGCCGCuGCCCCGc -3'
miRNA:   3'- -GGC---UCGGCGGga--------GA-CCGGCG-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 39046 0.69 0.36372
Target:  5'- gCCGggcGGCCGCCgguggguccgCUgGGCCGCuGCCCCGc -3'
miRNA:   3'- -GGC---UCGGCGGga--------GA-CCGGCG-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 39171 0.69 0.36372
Target:  5'- gCCGggcGGCCGCCgguggguccgCUgGGCCGCuGCCCCGc -3'
miRNA:   3'- -GGC---UCGGCGGga--------GA-CCGGCG-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 39296 0.69 0.36372
Target:  5'- gCCGggcGGCCGCCgguggguccgCUgGGCCGCuGCCCCGc -3'
miRNA:   3'- -GGC---UCGGCGGga--------GA-CCGGCG-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 39421 0.69 0.36372
Target:  5'- gCCGggcGGCCGCCgguggguccgCUgGGCCGCuGCCCCGc -3'
miRNA:   3'- -GGC---UCGGCGGga--------GA-CCGGCG-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 39546 0.69 0.36372
Target:  5'- gCCGggcGGCCGCCgguggguccgCUgGGCCGCuGCCCCGc -3'
miRNA:   3'- -GGC---UCGGCGGga--------GA-CCGGCG-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 39671 0.69 0.36372
Target:  5'- gCCGggcGGCCGCCgguggguccgCUgGGCCGCuGCCCCGc -3'
miRNA:   3'- -GGC---UCGGCGGga--------GA-CCGGCG-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 68916 0.69 0.36893
Target:  5'- cCCGAcggcaugccuaaugGCCGUCCUCUGGaCGCugguaCCCGc -3'
miRNA:   3'- -GGCU--------------CGGCGGGAGACCgGCGug---GGGC- -5'
33297 3' -65.3 NC_007605.1 + 38672 0.69 0.36372
Target:  5'- gCCGggcGGCCGCCgguggguccgCUgGGCCGCuGCCCCGc -3'
miRNA:   3'- -GGC---UCGGCGGga--------GA-CCGGCG-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 38547 0.69 0.36372
Target:  5'- gCCGggcGGCCGCCgguggguccgCUgGGCCGCuGCCCCGc -3'
miRNA:   3'- -GGC---UCGGCGGga--------GA-CCGGCG-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 38422 0.69 0.36372
Target:  5'- gCCGggcGGCCGCCgguggguccgCUgGGCCGCuGCCCCGc -3'
miRNA:   3'- -GGC---UCGGCGGga--------GA-CCGGCG-UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 160905 0.75 0.149093
Target:  5'- cCUGGGCUGCCC-CgGGCC-CACCCCa -3'
miRNA:   3'- -GGCUCGGCGGGaGaCCGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 156258 0.75 0.167757
Target:  5'- uCCG-GCCGCCCUCUGaGCUGCucucuuuuGCUCCu -3'
miRNA:   3'- -GGCuCGGCGGGAGAC-CGGCG--------UGGGGc -5'
33297 3' -65.3 NC_007605.1 + 160006 0.74 0.184169
Target:  5'- cCCGGGCCcgggaccgcGCCCUCcucugGGCCGCccgGCCUCGc -3'
miRNA:   3'- -GGCUCGG---------CGGGAGa----CCGGCG---UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 162579 0.72 0.242114
Target:  5'- gCgGGGCuCGUCgUCcGGCCGCugCCCGu -3'
miRNA:   3'- -GgCUCG-GCGGgAGaCCGGCGugGGGC- -5'
33297 3' -65.3 NC_007605.1 + 151110 0.71 0.294961
Target:  5'- gCCGcAGCCuGcCCCUCggcGGcCCGUGCCCCa -3'
miRNA:   3'- -GGC-UCGG-C-GGGAGa--CC-GGCGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 63046 0.7 0.33494
Target:  5'- gCG-GCgGCCgUCUGGCgCGCagggcugcugGCCCCGg -3'
miRNA:   3'- gGCuCGgCGGgAGACCG-GCG----------UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 48833 0.69 0.356367
Target:  5'- aCCGAG-CGCCCgcUCgGGCUGgCGgCCCCGa -3'
miRNA:   3'- -GGCUCgGCGGG--AGaCCGGC-GU-GGGGC- -5'
33297 3' -65.3 NC_007605.1 + 38297 0.69 0.36372
Target:  5'- gCCGggcGGCCGCCgguggguccgCUgGGCCGCuGCCCCGc -3'
miRNA:   3'- -GGC---UCGGCGGga--------GA-CCGGCG-UGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.