Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33299 | 3' | -58 | NC_007605.1 | + | 171114 | 0.68 | 0.770238 |
Target: 5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3' miRNA: 3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 170577 | 0.68 | 0.770238 |
Target: 5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3' miRNA: 3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 170054 | 0.68 | 0.770238 |
Target: 5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3' miRNA: 3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 169517 | 0.68 | 0.770238 |
Target: 5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3' miRNA: 3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 163104 | 0.68 | 0.732676 |
Target: 5'- uGGUCUa--UGCGGCCUCCUUcucGCCCa -3' miRNA: 3'- -UCAGAgggACGCUGGGGGAAu--UGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 159990 | 0.66 | 0.839214 |
Target: 5'- -cUCUgCCUcCGGCCgCCCcgGGCCCGg -3' miRNA: 3'- ucAGAgGGAcGCUGG-GGGaaUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 157308 | 0.78 | 0.256335 |
Target: 5'- cAGUCUCCCagUGCGugCCCgUUAACCa- -3' miRNA: 3'- -UCAGAGGG--ACGCugGGGgAAUUGGgc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 154665 | 0.66 | 0.869639 |
Target: 5'- gAGcCg-CCUGCGcCCCUCggGGCCCGu -3' miRNA: 3'- -UCaGagGGACGCuGGGGGaaUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 152953 | 0.66 | 0.869639 |
Target: 5'- cGcCUCCCaUGCuaagGGCCCCCUUccuuuCCCu -3' miRNA: 3'- uCaGAGGG-ACG----CUGGGGGAAuu---GGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 150759 | 0.66 | 0.872508 |
Target: 5'- cGGUCUcgugaCCCUGaaaGAugccuggacgcuauuCCCCCUccACCCGg -3' miRNA: 3'- -UCAGA-----GGGACg--CU---------------GGGGGAauUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 137979 | 0.68 | 0.751658 |
Target: 5'- cGUCUCUCUGauaAUCCCCaaugUGACCCu -3' miRNA: 3'- uCAGAGGGACgc-UGGGGGa---AUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 135459 | 0.68 | 0.761002 |
Target: 5'- cGUCaUCCCcGCGcACCCCCagu-CCCa -3' miRNA: 3'- uCAG-AGGGaCGC-UGGGGGaauuGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 134564 | 0.68 | 0.732676 |
Target: 5'- cGUCgguguugCCCUGgGGCgCCCCUc-GCCCa -3' miRNA: 3'- uCAGa------GGGACgCUG-GGGGAauUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 123523 | 0.67 | 0.8229 |
Target: 5'- gGGUaa-CCUGcCGACUCCCcUGGCCCc -3' miRNA: 3'- -UCAgagGGAC-GCUGGGGGaAUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 123285 | 0.69 | 0.713362 |
Target: 5'- cGGUCUCaaaCUGCuGCCCCCgg-GCCUc -3' miRNA: 3'- -UCAGAGg--GACGcUGGGGGaauUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 111324 | 0.68 | 0.779357 |
Target: 5'- uGUCUCCCca-GaACCCCCUcgagaGACCCa -3' miRNA: 3'- uCAGAGGGacgC-UGGGGGAa----UUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 109644 | 0.66 | 0.862323 |
Target: 5'- cAGUC-CUCUGCucgucgguGGCCUCCUgUAGCCCc -3' miRNA: 3'- -UCAGaGGGACG--------CUGGGGGA-AUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 109304 | 0.78 | 0.244598 |
Target: 5'- aAGUCUCCCUGUGACUCCacaUUGACgCa -3' miRNA: 3'- -UCAGAGGGACGCUGGGGg--AAUUGgGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 108298 | 0.66 | 0.847105 |
Target: 5'- gGGcCUCCCaccaccguuaUGCcuCCCCCUUuACCCa -3' miRNA: 3'- -UCaGAGGG----------ACGcuGGGGGAAuUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 103022 | 0.71 | 0.594229 |
Target: 5'- gAGUCUCagCUGCaGGCCuCCCUggguCCCGg -3' miRNA: 3'- -UCAGAGg-GACG-CUGG-GGGAauu-GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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