miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33299 3' -58 NC_007605.1 + 29761 0.67 0.814491
Target:  5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3'
miRNA:   3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5'
33299 3' -58 NC_007605.1 + 171114 0.68 0.770238
Target:  5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3'
miRNA:   3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5'
33299 3' -58 NC_007605.1 + 9226 0.67 0.805925
Target:  5'- uAGUCUUCCUG-GGCCCCUggGAgguacauguccCCCa -3'
miRNA:   3'- -UCAGAGGGACgCUGGGGGaaUU-----------GGGc -5'
33299 3' -58 NC_007605.1 + 95028 0.67 0.805925
Target:  5'- cGUUUCCCUGaCGGCCUCaggGGCCa- -3'
miRNA:   3'- uCAGAGGGAC-GCUGGGGgaaUUGGgc -5'
33299 3' -58 NC_007605.1 + 14416 0.67 0.814491
Target:  5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3'
miRNA:   3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5'
33299 3' -58 NC_007605.1 + 17485 0.67 0.814491
Target:  5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3'
miRNA:   3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5'
33299 3' -58 NC_007605.1 + 20554 0.67 0.814491
Target:  5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3'
miRNA:   3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5'
33299 3' -58 NC_007605.1 + 23623 0.67 0.814491
Target:  5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3'
miRNA:   3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5'
33299 3' -58 NC_007605.1 + 26692 0.67 0.814491
Target:  5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3'
miRNA:   3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5'
33299 3' -58 NC_007605.1 + 170577 0.68 0.770238
Target:  5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3'
miRNA:   3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5'
33299 3' -58 NC_007605.1 + 170054 0.68 0.770238
Target:  5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3'
miRNA:   3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5'
33299 3' -58 NC_007605.1 + 169517 0.68 0.770238
Target:  5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3'
miRNA:   3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5'
33299 3' -58 NC_007605.1 + 53552 0.78 0.262375
Target:  5'- cGGUCUCCUUGC--CCCCCgcGACCCGc -3'
miRNA:   3'- -UCAGAGGGACGcuGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 103022 0.71 0.594229
Target:  5'- gAGUCUCagCUGCaGGCCuCCCUggguCCCGg -3'
miRNA:   3'- -UCAGAGg-GACG-CUGG-GGGAauu-GGGC- -5'
33299 3' -58 NC_007605.1 + 97176 0.7 0.644124
Target:  5'- cGUCUCCCcuuUGgaaUGGCCCCUg-GACCCGg -3'
miRNA:   3'- uCAGAGGG---AC---GCUGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 82552 0.69 0.703602
Target:  5'- cAGg--CCCUGCccucaGGCCCCCgagUGGCCUGu -3'
miRNA:   3'- -UCagaGGGACG-----CUGGGGGa--AUUGGGC- -5'
33299 3' -58 NC_007605.1 + 123285 0.69 0.713362
Target:  5'- cGGUCUCaaaCUGCuGCCCCCgg-GCCUc -3'
miRNA:   3'- -UCAGAGg--GACGcUGGGGGaauUGGGc -5'
33299 3' -58 NC_007605.1 + 134564 0.68 0.732676
Target:  5'- cGUCgguguugCCCUGgGGCgCCCCUc-GCCCa -3'
miRNA:   3'- uCAGa------GGGACgCUG-GGGGAauUGGGc -5'
33299 3' -58 NC_007605.1 + 40012 0.68 0.761002
Target:  5'- cGGUuccCUCCCccaggGCGugCCCCgcuuGCCUGg -3'
miRNA:   3'- -UCA---GAGGGa----CGCugGGGGaau-UGGGC- -5'
33299 3' -58 NC_007605.1 + 135459 0.68 0.761002
Target:  5'- cGUCaUCCCcGCGcACCCCCagu-CCCa -3'
miRNA:   3'- uCAG-AGGGaCGC-UGGGGGaauuGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.