Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33300 | 3' | -52.6 | NC_007605.1 | + | 53418 | 1.15 | 0.003399 |
Target: 5'- gCCCCUCCUCAUCACGAUUUCGGCACCa -3' miRNA: 3'- -GGGGAGGAGUAGUGCUAAAGCCGUGG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 170403 | 0.75 | 0.700905 |
Target: 5'- gCCC-CCUCAUCACGGUcacgcaUGGCugCg -3' miRNA: 3'- gGGGaGGAGUAGUGCUAaa----GCCGugG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 170925 | 0.75 | 0.700905 |
Target: 5'- gCCC-CCUCAUCACGGUcacgcaUGGCugCg -3' miRNA: 3'- gGGGaGGAGUAGUGCUAaa----GCCGugG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 171463 | 0.75 | 0.700905 |
Target: 5'- gCCC-CCUCAUCACGGUcacgcaUGGCugCg -3' miRNA: 3'- gGGGaGGAGUAGUGCUAaa----GCCGugG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 169865 | 0.75 | 0.700905 |
Target: 5'- gCCC-CCUCAUCACGGUcacgcaUGGCugCg -3' miRNA: 3'- gGGGaGGAGUAGUGCUAaa----GCCGugG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 50405 | 0.71 | 0.870981 |
Target: 5'- cCCCCguggCCUUuggCACGGgccUGGCACCc -3' miRNA: 3'- -GGGGa---GGAGua-GUGCUaaaGCCGUGG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 105334 | 0.7 | 0.904334 |
Target: 5'- gCCCUCCgcCAUCAgGcgUUCccacgggGGCGCCc -3' miRNA: 3'- gGGGAGGa-GUAGUgCuaAAG-------CCGUGG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 75755 | 0.7 | 0.904958 |
Target: 5'- gUCCUCCUcCAUCugGGgggUGGCAUa -3' miRNA: 3'- gGGGAGGA-GUAGugCUaaaGCCGUGg -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 85445 | 0.7 | 0.904958 |
Target: 5'- cCCCCgaggCCUCugccggggaACGGg--CGGCACCu -3' miRNA: 3'- -GGGGa---GGAGuag------UGCUaaaGCCGUGG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 98989 | 0.7 | 0.904958 |
Target: 5'- uUCCUCCUCGUC-CGAcaa-GaGCGCCg -3' miRNA: 3'- gGGGAGGAGUAGuGCUaaagC-CGUGG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 52052 | 0.7 | 0.916933 |
Target: 5'- uCCCCUCCUCuacUGCGAcg--GGCACUc -3' miRNA: 3'- -GGGGAGGAGua-GUGCUaaagCCGUGG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 90265 | 0.7 | 0.922564 |
Target: 5'- gCCCCUCCUUA-C-CGAUUcUGGCugUu -3' miRNA: 3'- -GGGGAGGAGUaGuGCUAAaGCCGugG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 114682 | 0.7 | 0.927956 |
Target: 5'- cCCCUUCCUCAUacaGCGGg--UGGCuAUCu -3' miRNA: 3'- -GGGGAGGAGUAg--UGCUaaaGCCG-UGG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 51360 | 0.69 | 0.933109 |
Target: 5'- uCCCCUCCUCccaacugCugGAgccggUCGGaggagGCCg -3' miRNA: 3'- -GGGGAGGAGua-----GugCUaa---AGCCg----UGG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 74424 | 0.69 | 0.947141 |
Target: 5'- gCCCUCgUCAggcCGCGAgaggaUGGCAUCg -3' miRNA: 3'- gGGGAGgAGUa--GUGCUaaa--GCCGUGG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 168929 | 0.69 | 0.955327 |
Target: 5'- uCUCCUCCUCuUgGCGcuacuGUUUUGGCugUa -3' miRNA: 3'- -GGGGAGGAGuAgUGC-----UAAAGCCGugG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 24149 | 0.69 | 0.955327 |
Target: 5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCu -3' miRNA: 3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 61785 | 0.68 | 0.962606 |
Target: 5'- gCCgCCUCCUgCA-CACGAg--CGGCcaggGCCu -3' miRNA: 3'- -GG-GGAGGA-GUaGUGCUaaaGCCG----UGG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 59516 | 0.68 | 0.965917 |
Target: 5'- cCCCCUCUccuUCAagGCGGgcaagCGGCGgCg -3' miRNA: 3'- -GGGGAGG---AGUagUGCUaaa--GCCGUgG- -5' |
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33300 | 3' | -52.6 | NC_007605.1 | + | 48557 | 0.68 | 0.966237 |
Target: 5'- --aCUCCUCAggCACGAguuuaccaacaggCGGUACCa -3' miRNA: 3'- gggGAGGAGUa-GUGCUaaa----------GCCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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